Latin1 bug #75

	name: redbiom CI

	on:
	pull_request:
	push:
	branches:
	- master

	jobs:
	build-and-run-tests:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	# based roughly on https://github.com/conda-incubator/setup-miniconda#example-1-basic-usage
	# via biocore/empress
	python-version: ["3.7", "3.8", "3.9", "3.10"]

	steps:
	- name: Check out repository code
	uses: actions/checkout@v2

	- name: Setup for conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}

	- name: Install
	shell: bash -l {0}
	run: \|
	conda create --yes -n test-env python=${{ matrix.python-version }} requests pandas click redis h5py nose cython future
	conda activate test-env
	conda install -c conda-forge --yes scikit-bio biom-format
	pip install flake8 nltk msgpack
	pip install -e . --no-deps

	- name: Webdis install
	shell: bash -l {0}
	run: \|
	sudo apt-get -y install libevent-dev
	git clone https://github.com/nicolasff/webdis
	cd webdis
	make
	pwd

	- name: Test
	shell: bash -l {0}
	run: \|
	conda activate test-env

	redis-server --daemonize yes

	pwd
	pushd webdis
	./webdis &
	popd

	alias md5=md5sum
	export REDBIOM_HOST=http://127.0.0.1:7379
	redbiom summarize contexts # will return a nonzero exit status if it cannot communicate with the default host
	make test

	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: flake8
	uses: actions/setup-python@v2
	with:
	python-version: 3.7
	- name: install dependencies
	run: python -m pip install --upgrade pip
	- name: lint
	run: \|
	pip install -q flake8
	flake8 --ignore=E731 redbiom

Provide feedback