CPU optimizations
CPU optimizations yielding 1.5x speedup across the board on CPUs, no change to GPU performance.
What's Changed
- Add CPPFLAGS to R compile by @sfiligoi in #7
- Add support for UNIFRAC_TIMING_INFO env variable by @sfiligoi in #8
- Vectorize Weighted unifrac for CPUs by @sfiligoi in #9
- Add larger unifrac tests by @sfiligoi in #10
- Use plain mkstemp() if O_NOATIME is not available by @jmarshall in #6
- More aggressive vectorization of Weighted by @sfiligoi in #11
- Add zero checking to Unweighted for CPU code by @sfiligoi in #12
New Contributors
- @jmarshall made their first contribution in #6
Full Changelog: v1.1.1...v1.1.2