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CPU optimizations

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@wasade wasade released this 12 Oct 16:51
· 262 commits to main since this release
d95bc96

CPU optimizations yielding 1.5x speedup across the board on CPUs, no change to GPU performance.

What's Changed

  • Add CPPFLAGS to R compile by @sfiligoi in #7
  • Add support for UNIFRAC_TIMING_INFO env variable by @sfiligoi in #8
  • Vectorize Weighted unifrac for CPUs by @sfiligoi in #9
  • Add larger unifrac tests by @sfiligoi in #10
  • Use plain mkstemp() if O_NOATIME is not available by @jmarshall in #6
  • More aggressive vectorization of Weighted by @sfiligoi in #11
  • Add zero checking to Unweighted for CPU code by @sfiligoi in #12

New Contributors

Full Changelog: v1.1.1...v1.1.2