Merge pull request #15 from bioimage-io/updates #76
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| name: test and build docs | |
| on: push | |
| concurrency: test | |
| env: | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_TEST_BUCKET}} # testing! | |
| S3_FOLDER: ${{vars.S3_TEST_FOLDER}} # testing! | |
| S3_TEST_BUCKET: ${{vars.S3_TEST_BUCKET}} | |
| S3_TEST_FOLDER: ${{vars.S3_TEST_FOLDER}} | |
| S3_PYTEST_FOLDER: ${{vars.S3_PYTEST_FOLDER}} | |
| ZENODO_URL: ${{vars.ZENODO_TEST_URL}} # testing! | |
| ZENODO_TEST_URL: ${{vars.ZENODO_TEST_URL}} | |
| S3_ACCESS_KEY_ID: ${{secrets.S3_ACCESS_KEY_ID}} | |
| S3_SECRET_ACCESS_KEY: ${{secrets.S3_SECRET_ACCESS_KEY}} | |
| ZENODO_API_ACCESS_TOKEN: ${{secrets.ZENODO_TEST_API_ACCESS_TOKEN}} # testing! | |
| ZENODO_TEST_API_ACCESS_TOKEN: ${{secrets.ZENODO_TEST_API_ACCESS_TOKEN}} | |
| TEST_PACKAGE_ID: ${{vars.TEST_PACKAGE_ID}} | |
| TEST_PACKAGE_URL: ${{vars.TEST_PACKAGE_URL}} | |
| jobs: | |
| initial-cleanup: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" # caching pip dependencies | |
| - run: pip install . | |
| - run: backoffice wipe --bucket "${{vars.S3_TEST_BUCKET}}" --prefix "${{vars.S3_TEST_FOLDER}}" | |
| test-stage-wf: | |
| needs: initial-cleanup | |
| uses: ./.github/workflows/stage_call.yaml | |
| with: | |
| resource_id: ${{vars.TEST_PACKAGE_ID}} # testing! | |
| package_url: ${{vars.TEST_PACKAGE_URL}} # testing! | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_TEST_BUCKET}} # testing! | |
| S3_FOLDER: ${{vars.S3_TEST_FOLDER}}/ci # testing! | |
| secrets: inherit | |
| test-publish-wf: | |
| needs: test-stage-wf | |
| uses: ./.github/workflows/publish_call.yaml | |
| with: | |
| resource_id: ${{vars.TEST_PACKAGE_ID}} # testing! | |
| stage_number: 1 | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_TEST_BUCKET}} # testing! | |
| S3_FOLDER: ${{vars.S3_TEST_FOLDER}}/ci # testing! | |
| ZENODO_URL: ${{vars.ZENODO_TEST_URL}} # testing! | |
| secrets: inherit | |
| test-generate-collection-json-wf: | |
| needs: test-publish-wf | |
| uses: ./.github/workflows/generate_collection_json_call.yaml | |
| with: | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_TEST_BUCKET}} # testing! | |
| S3_FOLDER: ${{vars.S3_TEST_FOLDER}}/ci # testing! | |
| secrets: inherit | |
| test-backup-wf: | |
| needs: test-generate-collection-json-wf | |
| uses: ./.github/workflows/backup_call.yaml | |
| with: | |
| S3_HOST: ${{vars.S3_HOST}} | |
| S3_BUCKET: ${{vars.S3_TEST_BUCKET}} # testing! | |
| S3_FOLDER: ${{vars.S3_TEST_FOLDER}}/ci # testing! | |
| ZENODO_URL: ${{vars.ZENODO_TEST_URL}} # testing! | |
| secrets: inherit | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" # caching pip dependencies | |
| - run: pip install .[dev] | |
| - run: black . --check | |
| - run: pyright -p pyproject.toml | |
| - run: pytest | |
| - name: export documentation | |
| run: pdoc backoffice -o ./docs | |
| - uses: actions/upload-pages-artifact@v3 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| path: docs/ | |
| deploy_docs: | |
| needs: build | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| # Deploy to the github-pages environment | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |