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@FynnBe
FynnBe committed Mar 14, 2024
1 parent 7ebb95d commit 1d9139a
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652 changes: 648 additions & 4 deletions bioimageio/spec.html
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419 changes: 232 additions & 187 deletions bioimageio/spec/_description.html
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1 change: 1 addition & 0 deletions bioimageio/spec/_internal.html
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Expand Up @@ -46,6 +46,7 @@ <h2>Submodules</h2>
<li><a href="_internal/utils.html">utils</a></li>
<li><a href="_internal/validated_string.html">validated_string</a></li>
<li><a href="_internal/validation_context.html">validation_context</a></li>
<li><a href="_internal/validator_annotations.html">validator_annotations</a></li>
<li><a href="_internal/version_type.html">version_type</a></li>
<li><a href="_internal/warning_levels.html">warning_levels</a></li>
</ul>
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2 changes: 1 addition & 1 deletion bioimageio/spec/_internal/common_nodes.html
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Expand Up @@ -1418,7 +1418,7 @@ <h5>Inherited Members</h5>
<div id="ResourceDescrBase.fields_to_set_explicitly" class="classattr">
<div class="attr variable">
<span class="name">fields_to_set_explicitly</span><span class="annotation">: ClassVar[FrozenSet[LiteralString]]</span> =
<span class="default_value">frozenset({&#39;type&#39;, &#39;format_version&#39;})</span>
<span class="default_value">frozenset({&#39;format_version&#39;, &#39;type&#39;})</span>


</div>
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2 changes: 1 addition & 1 deletion bioimageio/spec/_internal/constants.html
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Expand Up @@ -338,7 +338,7 @@ <h5>Inherited Members</h5>
<div class="attr variable">
<span class="name">KNOWN_GH_USERS</span><span class="annotation">: Set[str]</span> =
<input id="KNOWN_GH_USERS-view-value" class="view-value-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<label class="view-value-button pdoc-button" for="KNOWN_GH_USERS-view-value"></label><span class="default_value">{&#39;danifranco&#39;, &#39;jansanrom&#39;, &#39;lenkaback&#39;, &#39;ctr26&#39;, &#39;k-dominik&#39;, &#39;iarganda&#39;, &#39;fynnbe&#39;, &#39;pedgomgal1&#39;, &#39;githubuser2&#39;, &#39;ivanhcenalmor&#39;, &#39;carlosuc3m&#39;, &#39;esgomezm&#39;, &#39;aaitorg&#39;, &#39;bioimageiobot&#39;, &#39;clementcaporal&#39;, &#39;cfusterbarcelo&#39;, &#39;constantinpape&#39;, &#39;oeway&#39;, &#39;donglaiw&#39;}</span>
<label class="view-value-button pdoc-button" for="KNOWN_GH_USERS-view-value"></label><span class="default_value">{&#39;lenkaback&#39;, &#39;k-dominik&#39;, &#39;constantinpape&#39;, &#39;aaitorg&#39;, &#39;danifranco&#39;, &#39;bioimageiobot&#39;, &#39;ctr26&#39;, &#39;iarganda&#39;, &#39;donglaiw&#39;, &#39;esgomezm&#39;, &#39;fynnbe&#39;, &#39;jansanrom&#39;, &#39;clementcaporal&#39;, &#39;githubuser2&#39;, &#39;ivanhcenalmor&#39;, &#39;pedgomgal1&#39;, &#39;cfusterbarcelo&#39;, &#39;oeway&#39;, &#39;carlosuc3m&#39;}</span>


</div>
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605 changes: 146 additions & 459 deletions bioimageio/spec/_internal/field_validation.html
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92 changes: 46 additions & 46 deletions bioimageio/spec/_internal/io.html
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84 changes: 42 additions & 42 deletions bioimageio/spec/_internal/io_utils.html
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2 changes: 1 addition & 1 deletion bioimageio/spec/_internal/packaging_context.html
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Expand Up @@ -207,7 +207,7 @@ <h1 class="modulename">
</div>
<div id="PackagingContext.file_sources" class="classattr">
<div class="attr variable">
<span class="name">file_sources</span><span class="annotation">: Dict[str, Union[Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), Predicate(func=&lt;function PurePath.is_absolute at 0x7f1c25245940&gt;)], <a href="url.html#HttpUrl">bioimageio.spec._internal.url.HttpUrl</a>]]</span>
<span class="name">file_sources</span><span class="annotation">: Dict[str, Union[Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), Predicate(func=&lt;function PurePath.is_absolute at 0x7afca4145940&gt;)], <a href="url.html#HttpUrl">bioimageio.spec._internal.url.HttpUrl</a>]]</span>


</div>
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279 changes: 140 additions & 139 deletions bioimageio/spec/_internal/root_url.html
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26 changes: 13 additions & 13 deletions bioimageio/spec/_internal/types.html
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Expand Up @@ -114,19 +114,19 @@ <h1 class="modulename">
</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="kn">from</span> <span class="nn">typing_extensions</span> <span class="kn">import</span> <span class="n">Annotated</span><span class="p">,</span> <span class="n">Literal</span>
</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a>
</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="kn">from</span> <span class="nn">.constants</span> <span class="kn">import</span> <span class="n">DOI_REGEX</span><span class="p">,</span> <span class="n">SI_UNIT_REGEX</span>
</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="kn">from</span> <span class="nn">.field_validation</span> <span class="kn">import</span> <span class="n">AfterValidator</span><span class="p">,</span> <span class="n">BeforeValidator</span>
</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">FileSource</span> <span class="k">as</span> <span class="n">FileSource</span>
</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">ImportantFileSource</span> <span class="k">as</span> <span class="n">ImportantFileSource</span>
</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">PermissiveFileSource</span> <span class="k">as</span> <span class="n">PermissiveFileSource</span>
</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">RelativeFilePath</span> <span class="k">as</span> <span class="n">RelativeFilePath</span>
</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">Sha256</span> <span class="k">as</span> <span class="n">Sha256</span>
</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">AbsoluteDirectory</span> <span class="k">as</span> <span class="n">AbsoluteDirectory</span>
</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">AbsoluteFilePath</span> <span class="k">as</span> <span class="n">AbsoluteFilePath</span>
</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">FileName</span> <span class="k">as</span> <span class="n">FileName</span>
</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="kn">from</span> <span class="nn">.license_id</span> <span class="kn">import</span> <span class="n">DeprecatedLicenseId</span> <span class="k">as</span> <span class="n">DeprecatedLicenseId</span>
</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="kn">from</span> <span class="nn">.license_id</span> <span class="kn">import</span> <span class="n">LicenseId</span> <span class="k">as</span> <span class="n">LicenseId</span>
</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="kn">from</span> <span class="nn">.url</span> <span class="kn">import</span> <span class="n">HttpUrl</span> <span class="k">as</span> <span class="n">HttpUrl</span>
</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="kn">from</span> <span class="nn">.validated_string</span> <span class="kn">import</span> <span class="n">ValidatedString</span>
</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">FileSource</span> <span class="k">as</span> <span class="n">FileSource</span>
</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">ImportantFileSource</span> <span class="k">as</span> <span class="n">ImportantFileSource</span>
</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">PermissiveFileSource</span> <span class="k">as</span> <span class="n">PermissiveFileSource</span>
</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">RelativeFilePath</span> <span class="k">as</span> <span class="n">RelativeFilePath</span>
</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="kn">from</span> <span class="nn">.io</span> <span class="kn">import</span> <span class="n">Sha256</span> <span class="k">as</span> <span class="n">Sha256</span>
</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">AbsoluteDirectory</span> <span class="k">as</span> <span class="n">AbsoluteDirectory</span>
</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">AbsoluteFilePath</span> <span class="k">as</span> <span class="n">AbsoluteFilePath</span>
</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="kn">from</span> <span class="nn">.io_basics</span> <span class="kn">import</span> <span class="n">FileName</span> <span class="k">as</span> <span class="n">FileName</span>
</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="kn">from</span> <span class="nn">.license_id</span> <span class="kn">import</span> <span class="n">DeprecatedLicenseId</span> <span class="k">as</span> <span class="n">DeprecatedLicenseId</span>
</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="kn">from</span> <span class="nn">.license_id</span> <span class="kn">import</span> <span class="n">LicenseId</span> <span class="k">as</span> <span class="n">LicenseId</span>
</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="kn">from</span> <span class="nn">.url</span> <span class="kn">import</span> <span class="n">HttpUrl</span> <span class="k">as</span> <span class="n">HttpUrl</span>
</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="kn">from</span> <span class="nn">.validated_string</span> <span class="kn">import</span> <span class="n">ValidatedString</span>
</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="kn">from</span> <span class="nn">.validator_annotations</span> <span class="kn">import</span> <span class="n">AfterValidator</span><span class="p">,</span> <span class="n">BeforeValidator</span>
</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a><span class="kn">from</span> <span class="nn">.version_type</span> <span class="kn">import</span> <span class="n">Version</span> <span class="k">as</span> <span class="n">Version</span>
</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>
</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="n">S</span> <span class="o">=</span> <span class="n">TypeVar</span><span class="p">(</span><span class="s2">&quot;S&quot;</span><span class="p">,</span> <span class="n">bound</span><span class="o">=</span><span class="n">Sequence</span><span class="p">[</span><span class="n">Any</span><span class="p">])</span>
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16 changes: 0 additions & 16 deletions bioimageio/spec/_internal/validated_string.html
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Expand Up @@ -90,9 +90,6 @@ <h2>API Documentation</h2>
</ul>

</li>
<li>
<a class="variable" href="#ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_">ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_</a>
</li>
</ul>


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</div>
</dl>
</div>
</section>
<section id="ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_">
<div class="attr variable">
<span class="name">ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_</span> =
<input id="ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_-view-value" class="view-value-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<label class="view-value-button pdoc-button" for="ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_-view-value"></label><span class="default_value">&lt;class &#39;<a href="#ValidatedString">ValidatedString</a>[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]&#39;&gt;</span>


</div>
<a class="headerlink" href="#ValidatedString[Annotated[str, MinLen, AfterValidator, AfterValidator, Annotated[TypeVar, Predicate], MaxLen]]_"></a>



</section>
</main>
<script>
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2 changes: 1 addition & 1 deletion bioimageio/spec/_internal/validation_context.html
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Expand Up @@ -294,7 +294,7 @@ <h1 class="modulename">
</div>
<div id="ValidationContext.root" class="classattr">
<div class="attr variable">
<span class="name">root</span><span class="annotation">: Union[<a href="root_url.html#RootHttpUrl">bioimageio.spec._internal.root_url.RootHttpUrl</a>, Annotated[pathlib.Path, PathType(path_type=&#39;dir&#39;), Predicate(func=&lt;function PurePath.is_absolute at 0x7f1c25245940&gt;)]]</span> =
<span class="name">root</span><span class="annotation">: Union[<a href="root_url.html#RootHttpUrl">bioimageio.spec._internal.root_url.RootHttpUrl</a>, Annotated[pathlib.Path, PathType(path_type=&#39;dir&#39;), Predicate(func=&lt;function PurePath.is_absolute at 0x7afca4145940&gt;)]]</span> =
<span class="default_value">PosixPath(&#39;.&#39;)</span>


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