Merge pull request #643 from bioimage-io/coverage

add code coverage for py3.12 tests

.github/workflows/build.yml

@@ -44,6 +44,14 @@ jobs:
       - run: pyright --version
       - run: pyright -p pyproject.toml --pythonversion ${{ matrix.python-version }}
       - run: pytest
+      - run: ls coverage.xml
+      - if: matrix.python-version == '3.12' && github.event_name == 'pull_request'
+        uses: orgoro/[email protected]
+        with:
+          coverageFile: coverage.xml
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+
 
   deploy:
     runs-on: ubuntu-latest

pyproject.toml

@@ -36,7 +36,7 @@ typeCheckingMode = "strict"
 useLibraryCodeForTypes = true
 
 [tool.pytest.ini_options]
-addopts = "-n auto --capture=no --failed-first"     # --doctest-modules
+addopts = "--cov=bioimageio --cov-report=xml -n auto --capture=no --failed-first" # --doctest-modules
 testpaths = ["bioimageio/spec", "tests", "scripts"]
 
 [tool.ruff]

setup.py

@@ -62,6 +62,7 @@
             "pre-commit",
             "psutil",  # parallel pytest with '-n auto'
             "pyright==1.1.378",
+            "pytest-cov",
             "pytest-xdist",  # parallel pytest
             "pytest",
             "python-devtools",

tests/test_generic/test_v0_2.py

@@ -167,7 +167,12 @@
     ],
 )
 def test_node(node_class: Type[Node], kwargs: Dict[str, Any], is_valid: bool):
-    check_node(node_class, kwargs, is_invalid=not is_valid)
+    check_node(
+        node_class,
+        kwargs,
+        is_invalid=not is_valid,
+        context=ValidationContext(perform_io_checks=True),
+    )
 
 
 def test_deprecated_license_in_generic():