Add GEA - FHC to index

index.html

@@ -293,8 +293,7 @@ <h1>Regulated Cell Death</h1>
 
           <tr>
             <td>
-              <b class="text-danger">NEW (10/01/2024)!</b> Differential Gene
-              Expression Analysis <br />
+              Differential Gene Expression Analysis <br />
               Pan-Cancer
               <br />
               Necroptosis, Ferroptosis & Pyroptosis
@@ -382,8 +381,7 @@ <h1>Regulated Cell Death</h1>
 
           <tr>
             <td>
-              <b class="text-danger">NEW (10/01/2024)!</b> Differential Gene
-              Expression Analysis <br />
+              Differential Gene Expression Analysis <br />
               Pan-Cancer
               <br />
               Multiple RCD Types (Including NETosis, Cuproptosis, etc.)
@@ -438,7 +436,70 @@ <h1>Regulated Cell Death</h1>
             </td>
             <td>
               <a
-                href="https://github.com/bioinfodlsu/rcd-playground/blob/main/5.%20Differential%20Gene%20Expression%20Analysis%20-%20TCGA%20-%20Pan-cancer%20-%20More%20RCD%20Types.nb.html"
+                href="https://github.com/bioinfodlsu/rcd-playground/blob/main/5.%20Differential%20Gene%20Expression%20Analysis%20-%20TCGA%20-%20Pan-cancer%20-%20More%20RCD%20Types.Rmd"
+                target="_blank"
+                >Code</a
+              >
+            </td>
+          </tr>
+
+          <tr>
+            <td>
+              Gene Expression Analysis <br />
+              Fetal colon cell line FHC
+              <br />
+              Necroptosis, Ferroptosis & Pyroptosis
+            </td>
+            <td>
+              <ol style="margin-left: -1em">
+                <li>
+                  Download RNA-seq data from this
+                  <b
+                    ><a
+                      href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232211"
+                      >dataset</a
+                    >
+                    (GSE232211)</b
+                  >.
+                  <ul>
+                    <li>
+                      The counts matrices were generated using
+                      <a
+                        href="https://www.ncbi.nlm.nih.gov/geo/info/rnaseqcounts.html"
+                        ><b>NCBI's RNA-seq count data generation pipeline</b></a
+                      >.
+                    </li>
+                  </ul>
+                </li>
+                <li>
+                  Download RCD gene sets for
+                  <b>necroptosis, ferroptosis, and pyroptosis</b> from
+                  <b
+                    ><a href="http://chenyclab.com/RCDdb/index.html"
+                      >RCDdb</a
+                    ></b
+                  >.
+                </li>
+                <li>
+                  For each RCD type:
+                  <ul>
+                    <li>
+                      Plot the TPM value per RCD-related gene for each RCD type.
+                    </li>
+                  </ul>
+                </li>
+              </ol>
+            </td>
+            <td>
+              <a
+                href="6. Gene Expression Analysis - FHC.nb.html"
+                target="_blank"
+                >Results</a
+              >
+            </td>
+            <td>
+              <a
+                href="https://github.com/bioinfodlsu/rcd-playground/blob/main/6.%20Gene%20Expression%20Analysis%20-%20FHC.Rmd"
                 target="_blank"
                 >Code</a
               >