set runAdapterClipping to true by default

biowdl · Dec 16, 2022 · f965016 · f965016
1 parent 18498a6
commit f965016
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diff --git a/CHANGELOG b/CHANGELOG
@@ -7,6 +7,10 @@ Newest changes should be on top.
 This document is user facing. Please word the changes in such a way
 that users understand how the changes affect the new version.
 -->
+version 3.0.3
+---------------------------
++ `runAdapterClipping` is now set to true by default.
+
 version 3.0.2
 ---------------------------
 + Limit the number of chunks per fastq file to 16. Fastp will run into

diff --git a/WGSinCancerDiagnostics.wdl b/WGSinCancerDiagnostics.wdl
@@ -95,11 +95,11 @@ workflow WGSinCancerDiagnostics {
         File cohortMapping
         File cohortPercentiles
 
-        Boolean runAdapterClipping = false
+        Boolean runAdapterClipping = true
         Int totalMappingChunks = 25
     }
 
-    String versionString = "3.0.2"
+    String versionString = "3.0.3"
 
     meta {allowNestedInputs: true}