v1.0.0 beta 1

transrate v1.0.0 beta 1

This is the first beta release of Transrate v1. Please report any bugs on the issue tracker. Documentation for this release is on the transrate website: http://hibberdlab.com/transrate/.

To install:

$ gem install --pre transrate --version 1.0.0.beta1
$ transrate --install-deps

If you are updating from a version below v1, please see the release notes for v1.0.0.alpha1.

Changelog

• depend on SNAP dev build 63, which includes a variety of fixes for bugs found by @cboursnell. The SNAP team have been extremely helpful by rapidly responding to all our reports.
• the contig score no longer includes the 'uniqueness' component, because tests showed it was penalising valid alternative isoforms.
• contigs are automatically sorted into FASTA files containing the 'good', 'fragmented', 'chimeric' and 'bad' contigs.