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34 Open 108 Closed
34 Open 108 Closed
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Issues list

QUAL & GNOMAD rounded out
#159 opened Jul 18, 2024 by jomoxi
2
Tolerant VCF parsing
#156 opened Aug 22, 2023 by drtconway
3
Resolving ambiguity in multiallelic sites
#155 opened Aug 15, 2023 by e-271
vcfanno fails to parse header of bcf file
#154 opened Apr 12, 2023 by edg1983
2
vcfanno doesn't annotate sites that are polymorphic in query vcf but fixed for reference allele in annotation vcf
#152 opened Feb 9, 2023 by AaronRuben
2
support for GWAS summary TSV files
#142 opened Jul 12, 2021 by darked89
1
Annotation header Ex. SnpEffVersion
#140 opened Mar 21, 2021 by raonyguimaraes
5
Ability to add fallback / default values for fields where annotation source is missing
#139 opened Mar 7, 2021 by ssadedin
Post-Annotation for new SpliceAI VCFs
#138 opened Feb 22, 2021 by Phillip-a-richmond
8
Annotating both ends of translocation
#135 opened Jan 29, 2021 by lconde-ucl
2
error: index out of range. when FORMAT field is provided but no sample columns present
#134 opened Jan 25, 2021 by vindex10
5
breaking down CADD scores file into individual chromosomes
#131 opened Nov 28, 2020 by samkh918
4
Trouble using 'first' op on dbNSFP txt file
#129 opened Sep 23, 2020 by IvantheDugtrio
5
gene set annotation from GMT file
#126 opened Aug 11, 2020 by dridk
Annotations of type float slightly differ from values in the resource
#125 opened Aug 7, 2020 by bartcharbon
1
How to extract fields that are not ##INFO from gnomAD vcf?
#124 opened Jul 9, 2020 by francoiskroll
2
working with VCF files containing SNV and CNV both like
#121 opened Apr 28, 2020 by snashraf
5 tasks
3
Vcfanno does not use pipes to delimit multiple annotations for a single ALT allele
#114 opened Jul 30, 2019 by ptn24
5 tasks
4
Annotating Breakend Points (<BND>)
#111 opened Jun 24, 2019 by ajaarma
3
api.go:789: unexpected header line
#107 opened Apr 3, 2019 by BriMeireles
4
Using vcfanno to annotate SV calls with GNOMAD SV frequencies
#106 opened Mar 18, 2019 by naumenko-sa
10
multi allelic vcf: vcfanno is not respecting VCF number format and is flipping scores
#87 opened Jun 5, 2018 by RoanKanninga
7
allow non-standard file names
#81 opened Dec 15, 2017 by brentp
1
max of NA returns 0
#79 opened Nov 22, 2017 by brentp
feature request - indicate annotation file has a subset of chroms
#73 opened Aug 17, 2017 by drmjc
2
ProTip! Exclude everything labeled bug with -label:bug.