pyproject.toml

[build-system]
requires = ["hatchling>=1.26.1"]
build-backend = "hatchling.build"

[project]
name = "celldega"
version = "0.8.0"
dependencies = [
    "anywidget==0.9.6",
    "pandas~=2.2.2",
    "geopandas~=0.14.3",
    "pyarrow~=15.0.2",
    "matplotlib~=3.8.4",
    "geopandas~=0.14.3",
    "zarr~=2.17.2",
    "tifffile~=2024.4.18",
    "imagecodecs~=2024.1.1",
    "scanpy~=1.10.2",
    "squidpy~=1.5.0",
    "shapely~=2.0.5",
    "polars~=1.10.0",
    "libpysal~=4.8.1",
    "spatialdata~=0.2.6",
    "spatialdata_io~=0.1.6"
]
readme = "README.md"

[project.optional-dependencies]
dev = [
    "watchfiles",
    "jupyterlab",
    "pylint",
    "black"
]
pre = [
    "pyvips~=2.2.2"
] # optional dependencies for pre-processing

docs = [
    "mkdocs",
    "mkdocs-material",
    "mkdocstrings[python]",
    "mkdocstrings[javascript]"
] # optional dependencies for documentation

# automatically add the dev feature to the default env (e.g., hatch shell)
[tool.hatch.envs.default]
features = ["dev"]

[tool.hatch.build]
only-packages = true
artifacts = ["src/celldega/static/*"]

[tool.hatch.build.hooks.jupyter-builder]
build-function = "hatch_jupyter_builder.npm_builder"
ensured-targets = ["src/celldega/static/widget.js"]
skip-if-exists = ["src/celldega/static/widget.js"]
dependencies = ["hatch-jupyter-builder>=0.5.0"]

[tool.hatch.build.hooks.jupyter-builder.build-kwargs]
npm = "npm"
build_cmd = "build"