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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 596

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 991 371

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 360

Repositories

Showing 10 of 1333 repositories
  • monorepo Public

    Compendium of tools for the Imaging Platform

    broadinstitute/monorepo’s past year of commit activity
    Python 9 BSD-3-Clause 1 12 1 Updated Jan 11, 2025
  • tree-sitter-wdl Public Forked from jdidion/tree-sitter-wdl

    Tree-sitter grammar for WDL (Workflow Description Language)

    broadinstitute/tree-sitter-wdl’s past year of commit activity
    JavaScript 0 MIT 1 0 0 Updated Jan 11, 2025
  • ist_benchmarking Public
    broadinstitute/ist_benchmarking’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jan 11, 2025
  • ml4h Public
    broadinstitute/ml4h’s past year of commit activity
    Python 128 24 30 (1 issue needs help) 21 Updated Jan 11, 2025
  • mitograph Public
    broadinstitute/mitograph’s past year of commit activity
    Rust 0 0 0 1 Updated Jan 11, 2025
  • ema Public
    broadinstitute/ema’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jan 11, 2025
  • heimdall Public
    broadinstitute/heimdall’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 11, 2025
  • dig-aggregator-methods Public

    Monorepo of methods implemented for the Aggregator

    broadinstitute/dig-aggregator-methods’s past year of commit activity
    Python 1 BSD-3-Clause 2 0 7 Updated Jan 11, 2025
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    broadinstitute/depmap-portal’s past year of commit activity
    Python 8 BSD-2-Clause 1 0 5 Updated Jan 11, 2025
  • warp Public

    WDL Analysis Research Pipelines

    broadinstitute/warp’s past year of commit activity
    WDL 207 BSD-3-Clause 100 7 16 Updated Jan 11, 2025
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