-
Notifications
You must be signed in to change notification settings - Fork 3
/
best_default_112115_825am__demography.par
94 lines (91 loc) · 4.47 KB
/
best_default_112115_825am__demography.par
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
length 3000000
mutation_rate 1.25e-08
recomb_file /idi/sabeti-scratch/jvitti/params/test_recom.recom
#/Users/vitti/Desktop/cms_ml_2/params/test_recom.recom
gene_conversion_relative_rate 2.3
pop_define 1 YRI
sample_size 1 172
pop_size 1 500000
pop_define 2 CEU
sample_size 2 172
pop_size 2 250000
pop_define 3 CHB
sample_size 3 172
pop_size 3 750000
pop_define 4 BEB
sample_size 4 172
pop_size 4 1000000
pop_event migration_rate "mig BEB->CHB" 4 3 0 0.00136172093665
pop_event migration_rate "mig BEB->YRI" 4 1 0 0.005
pop_event migration_rate "mig CEU->BEB" 2 4 0 0.005
pop_event migration_rate "mig CEU->YRI" 2 1 0 0.01
pop_event migration_rate "mig CHB->BEB" 3 4 0 0.00226891562673
pop_event migration_rate "mig CHB->CEU" 3 2 0 1e-05
pop_event migration_rate "mig CHB->YRI" 3 1 0 0.001
pop_event migration_rate "mig YRI->CEU" 1 2 0 0.01
pop_event migration_rate "mig YRI->CHB" 1 3 0 0.001
pop_event migration_rate "mig YRI->BEB" 1 4 0 0.00728279079125
pop_event exp_change_size2 "BEB exp Ne change" 4 1 50 1000000 50000
pop_event exp_change_size2 "CHB exp Ne change" 3 1 75 750000 15000
pop_event exp_change_size2 "YRI exp Ne change" 1 1 50 500000 40000
pop_event migration_rate "mig CEU->CHB" 2 3 1 0.00061381604486
pop_event exp_change_size2 "CEU exp Ne change" 2 1 50 250000 5039
pop_event migration_rate "mig BEB->CHB" 4 3 4 1e-10
pop_event migration_rate "mig YRI->CHB" 1 3 6 0.0001
pop_event migration_rate "mig BEB->CEU" 4 2 10 0.0003
pop_event migration_rate "mig BEB->YRI" 4 1 10 0.0002
pop_event migration_rate "mig CEU->CHB" 2 3 10 0.005
pop_event migration_rate "mig CEU->YRI" 2 1 10 0.00116816924107
pop_event migration_rate "mig CHB->BEB" 3 4 10 1e-10
pop_event migration_rate "mig CHB->CEU" 3 2 10 1e-05
pop_event migration_rate "mig CHB->YRI" 3 1 10 0.000141006397915
pop_event migration_rate "mig YRI->BEB" 1 4 10 0.0002
pop_event migration_rate "mig YRI->CEU" 1 2 10 0.0005
pop_event migration_rate "mig CEU->YRI" 2 1 28 0.0001
pop_event migration_rate "mig BEB->CHB" 4 3 46 1e-10
pop_event bottleneck "YRI bottleneck" 1 50 1e-10
pop_event exp_change_size2 "BEB exp Ne change" 4 50 72 50000 4834
pop_event exp_change_size2 "CEU exp Ne change" 2 50 300 5039 1500
pop_event exp_change_size2 "YRI exp Ne change" 1 50 350 40000 8000
pop_event migration_rate "mig YRI->CEU" 1 2 51 2.82017544024e-07
pop_event bottleneck "BEB bottleneck" 4 67 1e-10
pop_event admix "BEB admix" 4 2 68 0.44667558657
pop_event exp_change_size2 "CHB exp Ne change" 3 75 300 15000 3000
pop_event migration_rate "mig CEU->CHB" 2 3 94 1e-10
pop_event migration_rate "mig BEB->CEU" 4 2 95 0.0001
pop_event migration_rate "mig BEB->CEU" 4 2 100 0.0001
pop_event migration_rate "mig BEB->YRI" 4 1 100 0.00269333810676
pop_event migration_rate "mig CEU->BEB" 2 4 100 3.18160032659e-09
pop_event migration_rate "mig CHB->BEB" 3 4 100 1e-10
pop_event migration_rate "mig CHB->CEU" 3 2 100 0.0002
pop_event migration_rate "mig CHB->YRI" 3 1 100 3.2668261552e-11
pop_event migration_rate "mig CEU->BEB" 2 4 110 3.18160032659e-09
pop_event bottleneck "BEB bottleneck" 4 149 1e-10
pop_event split "BEB split" 3 4 150
pop_event migration_rate "mig YRI->CHB" 1 3 189 1e-10
pop_event exp_change_size2 "CEU exp Ne change" 2 300 2000 1500 1250
pop_event exp_change_size2 "CHB exp Ne change" 3 300 900 3000 1000
pop_event exp_change_size2 "YRI exp Ne change" 1 350 1087 8000 18397
pop_event bottleneck "CEU bottleneck" 2 500 1e-10
pop_event bottleneck "CHB bottleneck" 3 500 0.118659009739
pop_event bottleneck "YRI bottleneck" 1 500 1e-10
pop_event exp_change_size2 "YRI exp Ne change" 1 1087 3500 18397 10000
pop_event bottleneck "CHB bottleneck" 3 1799 0.0904657845968
pop_event split "CHB split" 2 3 1800
pop_event bottleneck "CEU bottleneck" 2 2027 0.00282084598118
pop_event split "CEU split" 1 2 2028
pop_event change_size "YRI Ne change" 1 4000 29700
pop_event bottleneck "YRI bottleneck" 1 5000 0.001
pop_event change_size "YRI Ne change" 1 15000 15000
pop_event migration_rate "no mig YRI->CEU" 1 2 2027 0
pop_event migration_rate "no mig CEU->YRI" 2 1 2027 0
pop_event migration_rate "no mig YRI->CHB" 1 3 2027 0
pop_event migration_rate "no mig CHB->YRI" 3 1 2027 0
pop_event migration_rate "no mig CEU->CHB" 2 3 2027 0
pop_event migration_rate "no mig CHB->CEU" 3 2 2027 0
pop_event migration_rate "no mig YRI->BEB" 1 4 149 0
pop_event migration_rate "no mig BEB->YRI" 4 1 149 0
pop_event migration_rate "no mig CEU->BEB" 2 4 149 0
pop_event migration_rate "no mig BEB->CEU" 4 2 149 0
pop_event migration_rate "no mig CHB->BEB" 3 4 149 0
pop_event migration_rate "no mig BEB->CHB" 4 3 149 0