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Error in .order_seqlevels(chrom_sizes[, "chrom"]) : #120

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ekushele opened this issue Feb 28, 2023 · 0 comments
Open

Error in .order_seqlevels(chrom_sizes[, "chrom"]) : #120

ekushele opened this issue Feb 28, 2023 · 0 comments

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@ekushele
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Hello,
I'm trying to run ichorCNA, but get the error:

Error in .order_seqlevels(chrom_sizes[, "chrom"]) :
  !anyNA(m32) is not TRUE
Calls: getSeqInfo ... FETCH_ORDERED_CHROM_SIZES -> .order_seqlevels -> stopifnot
Execution halted

It worked until a month ago, and I found it crashes because UCSC updated there genome assembly (Bioconductor/GenomeInfoDb#82 (comment)).

What can I do?
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@ekushele