Running ichorCNA on cell free mitochondrial DNA

[Ons14]

Hello,

I'm a master's student working on cell-free mitochondrial DNA. I found this article "The landscape of cell‑free mitochondrial
DNA in liquid biopsy for cancer detection" (https://pubmed.ncbi.nlm.nih.gov/37828498/) where they used ichorCNA (commit 5bfc03e) but they didn't specify the modifications made to ensure the pipeline works on chrM.

Any tips or suggestions would be greatly appreciated.

Thank you very much.