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Plot geographic distribution of samples #17

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fritzo opened this issue Jan 30, 2022 · 1 comment
Open

Plot geographic distribution of samples #17

fritzo opened this issue Jan 30, 2022 · 1 comment
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enhancement New feature or request

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@fritzo
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fritzo commented Jan 30, 2022

Edgar et al. (2022) use Amazon Location Service to convert place names to (lat,long) pairs. We could do something similar to visualize the global distribution of samples.

@fritzo fritzo added the enhancement New feature or request label Jan 30, 2022
@dpark01
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dpark01 commented Jan 30, 2022

@tomkinsc has also used the Google Maps API for this purpose before, it’s pretty straightforward.

That said, if you’re using nextstrain open data sets or their ingest/ETL scripts for restricted data sets, the location metadata should already map nicely to this table: https://github.com/nextstrain/ncov/blob/master/defaults/lat_longs.tsv

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