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Buenrostro Lab

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  1. stimATAC_analyses_code stimATAC_analyses_code Public

    All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs

    R 37 12

  2. FigR FigR Public

    Functional Inference of Gene Regulation

    HTML 36 10

  3. dscATAC_analysis_code dscATAC_analysis_code Public

    Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"

    R 10 3

  4. cellrangerRkit cellrangerRkit Public

    v1.1.0

    R 4 2

  5. tss-annotation tss-annotation Public

    Simple reproducible managment of annotated TSS and gene bodies

    Shell 4 1

  6. slide_dna_seq_analysis slide_dna_seq_analysis Public

    Analysis of slide-DNA-seq data in Zhao, Chiang, et al.

    MATLAB 3 1

Repositories

Showing 10 of 35 repositories
  • exigs_code Public

    Code to process and analyze ExIGS data from Labade*, Chiang*, Comenho* et al.

    buenrostrolab/exigs_code’s past year of commit activity
    MATLAB 1 MIT 0 0 0 Updated Sep 24, 2024
  • FigR Public

    Functional Inference of Gene Regulation

    buenrostrolab/FigR’s past year of commit activity
    HTML 36 MIT 10 24 1 Updated Jul 5, 2024
  • GMP_analyses_code Public
    buenrostrolab/GMP_analyses_code’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 13, 2024
  • stimATAC_analyses_code Public

    All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs

    buenrostrolab/stimATAC_analyses_code’s past year of commit activity
    R 37 12 1 1 Updated Mar 20, 2023
  • buenrostrolab.github.io Public Forked from daattali/beautiful-jekyll

    Buenrostro Lab Webpage Repo

    buenrostrolab/buenrostrolab.github.io’s past year of commit activity
    HTML 1 MIT 16,309 0 0 Updated Mar 28, 2022
  • slide_dna_seq_analysis Public

    Analysis of slide-DNA-seq data in Zhao, Chiang, et al.

    buenrostrolab/slide_dna_seq_analysis’s past year of commit activity
    MATLAB 3 1 0 0 Updated Oct 6, 2021
  • lungATAC_analysis_code Public
    buenrostrolab/lungATAC_analysis_code’s past year of commit activity
    R 1 1 0 0 Updated May 17, 2020
  • 10x_multibead_images Public

    Repo for images for 10X imaging

    buenrostrolab/10x_multibead_images’s past year of commit activity
    0 0 0 0 Updated Oct 3, 2019
  • dscATAC_analysis_code Public

    Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"

    buenrostrolab/dscATAC_analysis_code’s past year of commit activity
    R 10 3 1 0 Updated Sep 30, 2019
  • immgen_atac_rna_data Public

    Repository that pairs the ImmGen ATAC and RNA data (Yoshida et al 2019 Cell)

    buenrostrolab/immgen_atac_rna_data’s past year of commit activity
    0 0 0 0 Updated May 9, 2019
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