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<!DOCTYPE html>
<html>
<head>
<meta charset='utf-8'>
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<meta name="description" content="ImmGen ATAC Presentation : Presented December 9, 2016">
<link rel="stylesheet" type="text/css" media="screen" href="stylesheets/stylesheet.css">
<title>ImmGen ATAC Presentation</title>
</head>
<body>
<!-- HEADER -->
<div id="header_wrap" class="outer">
<header class="inner">
<a id="forkme_banner" href="https://github.com/buenrostrolab/ImmGenATAC">View on GitHub</a>
<h1 id="project_title">ImmGen ATAC Presentation</h1>
<h2 id="project_tagline">Presented December 9, 2016</h2>
<section id="downloads">
<a class="zip_download_link" href="https://github.com/buenrostrolab/ImmGenATAC/zipball/master">Download this project as a .zip file</a>
<a class="tar_download_link" href="https://github.com/buenrostrolab/ImmGenATAC/tarball/master">Download this project as a tar.gz file</a>
</section>
</header>
</div>
<!-- MAIN CONTENT -->
<div id="main_content_wrap" class="outer">
<section id="main_content" class="inner">
<h3>
<a id="about" class="anchor" href="#about" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>About</h3>
<p>Presentation given by Caleb Lareau and Hide Yoshida on December 9, 2016 on behalf of Sara Mostafavi, Christophe Benoist, Jason Buenrostro, and the members of the ImmGen ATAC working consortium. </p>
<h3>
<a id="we-hope-you-enjoyed-the-talk" class="anchor" href="#we-hope-you-enjoyed-the-talk" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>We hope you enjoyed the talk!</h3>
<p><a href="https://github.com/buenrostrolab/ImmGenATAC/blob/master/ImmGen_12092016.pptx">Slides</a> are available here.</p>
<h3>
<a id="want-to-interact-with-the-data" class="anchor" href="#want-to-interact-with-the-data" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Want to interact with the data?</h3>
<p><em>Some of these pages may take a moment to load</em></p>
<ul>
<li>Here's a <a href="https://cdn.rawgit.com/buenrostrolab/ImmGen/master/code/networkStuff.html">2D representation of the samples</a> with select transcription factor deviation scores noted. </li>
<li>The sample-sample <a href="https://cdn.rawgit.com/buenrostrolab/ImmGen/master/code/sampleCors.html">correlation heatmaps</a> can be found here. </li>
<li>You can visualize the data in a <a href="http://rstats.immgen.org/Chromatin/chromatin.html">UCSC browser instance</a>.</li>
<li>mm10 aligned bigwigs, bam files, etc. are available through <a href="https://www.dropbox.com/sh/6uqqftra4x9r0y3/AAA48oF_J5NZosGfL4plnwVNa?dl=0">Dropbox</a>.</li>
</ul>
</section>
</div>
<!-- FOOTER -->
<div id="footer_wrap" class="outer">
<footer class="inner">
<p class="copyright">ImmGen ATAC Presentation maintained by <a href="https://github.com/buenrostrolab">buenrostrolab</a></p>
<p>Published with <a href="https://pages.github.com">GitHub Pages</a></p>
</footer>
</div>
</body>
</html>