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bupaverse · Jan 22, 2023 · e5f8342 · e5f8342
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diff --git a/advanced_maps.html b/advanced_maps.html
diff --git a/animate_maps.html b/animate_maps.html
diff --git a/case_filters.html b/case_filters.html
diff --git a/collapse.html b/collapse.html
diff --git a/create_logs.html b/create_logs.html
diff --git a/dotted_chart.html b/dotted_chart.html
@@ -568,9 +568,9 @@ <h1 class="title toc-ignore">bupaR Docs | Dotted Charts</h1>
 <h1 class="tabset tabset-pills">Dotted chart</h1>
 <div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(bupaverse)</span></code></pre></div>
 <p>Dotted charts can be made with <code>dotted_chart()</code>. A dotted
-chart is a graph in which each activity instance is displayed with by a
-dot. The x-axis refers to the time aspect, while the y-axis refers to
-cases. The dotted chart function has 3 arguments.</p>
+chart is a graph in which each activity instance is displayed by a dot.
+The x-axis refers to the time aspect, while the y-axis refers to cases.
+The dotted chart function has 3 arguments:</p>
 <ul>
 <li><strong>x</strong>:
 <ul>
@@ -589,7 +589,7 @@ <h1 class="tabset tabset-pills">Dotted chart</h1>
 instances. Defaults to the activity type.</li>
 </ul>
 <p>Below, you can see some examples for dotted charts with various
-configurations</p>
+configurations.</p>
 <div id="absolute" class="section level2">
 <h2>Absolute</h2>
 <div class="blue">
@@ -631,7 +631,7 @@ <h1 class="unlisted unnumbered"></h1>
 <p>Other configurations:</p>
 <ul>
 <li>change the used color scale by configuring the
-<code>scale_color</code> argument</li>
+<code>scale_color</code> argument.</li>
 </ul>
 <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a>sepsis <span class="sc">%&gt;%</span></span>
 <span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a>    <span class="fu">dotted_chart</span>(<span class="at">x =</span> <span class="st">&quot;relative_week&quot;</span>,</span>

diff --git a/event_filters.html b/event_filters.html
@@ -792,8 +792,8 @@ <h2>Trim to Endpoints</h2>
 <div class="sourceCode" id="cb16"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a>patients <span class="sc">%&gt;%</span></span>
 <span id="cb16-2"><a href="#cb16-2" aria-hidden="true" tabindex="-1"></a>    <span class="fu">filter_trim</span>(<span class="at">start_activities =</span> <span class="st">&quot;Registration&quot;</span>, <span class="at">end_activities =</span>  <span class="fu">c</span>(<span class="st">&quot;MRI SCAN&quot;</span>,<span class="st">&quot;X-Ray&quot;</span>)) <span class="sc">%&gt;%</span></span>
 <span id="cb16-3"><a href="#cb16-3" aria-hidden="true" tabindex="-1"></a>    <span class="fu">process_map</span>(<span class="at">type =</span> <span class="fu">performance</span>())</span></code></pre></div>
-<div class="grViz html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-62f8027d49b3e38aed2e" style="width:672px;height:480px;"></div>
-<script type="application/json" data-for="htmlwidget-62f8027d49b3e38aed2e">{"x":{"diagram":"digraph {\n\ngraph [layout = \"dot\",\n       outputorder = \"edgesfirst\",\n       bgcolor = \"white\",\n       rankdir = \"LR\"]\n\nnode [fontname = \"Helvetica\",\n      fontsize = \"10\",\n      shape = \"circle\",\n      fixedsize = \"true\",\n      width = \"0.5\",\n      style = \"filled\",\n      fillcolor = \"aliceblue\",\n      color = \"gray70\",\n      fontcolor = \"gray50\"]\n\nedge [fontname = \"Helvetica\",\n     fontsize = \"8\",\n     weight = \"1.5\",\n     color = \"gray80\",\n     arrowsize = \"0.5\"]\n\n  \"1\" [label = \"End\", shape = \"circle\", style = \"rounded,filled\", fontcolor = \"brown4\", color = \"brown4\", tooltip = \"ARTIFICIAL_END\n0 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFFFFF\"] \n  \"2\" [label = \"Start\", shape = \"circle\", style = \"rounded,filled\", fontcolor = \"chartreuse4\", color = \"chartreuse4\", tooltip = \"ARTIFICIAL_START\n0 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFFFFF\"] \n  \"3\" [label = \"Blood test\n332.06 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"Blood test\n332.06 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FCBBA1\"] \n  \"4\" [label = \"MRI SCAN\n248.99 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"MRI SCAN\n248.99 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FEE0D2\"] \n  \"5\" [label = \"Registration\n165.55 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"Registration\n165.55 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFF5F0\"] \n  \"6\" [label = \"Triage and Assessment\n786.79 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"white\", color = \"grey\", tooltip = \"Triage and Assessment\n786.79 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#99000D\"] \n  \"7\" [label = \"X-Ray\n290.76 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"X-Ray\n290.76 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FCBBA1\"] \n\"2\"->\"5\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"3\"->\"4\" [label = \"1524.19 mins\", penwidth = \"2.92128602061254\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"4\"->\"1\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"5\"->\"6\" [label = \"756.21 mins\", penwidth = \"1.95322283903858\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"6\"->\"3\" [label = \"3040.61 mins\", penwidth = \"4.8327727871476\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"6\"->\"7\" [label = \"3173.28 mins\", penwidth = \"5\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"7\"->\"1\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n}","config":{"engine":"dot","options":null}},"evals":[],"jsHooks":[]}</script>
+<div class="grViz html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-7089c9ef2115dda3b1e2" style="width:672px;height:480px;"></div>
+<script type="application/json" data-for="htmlwidget-7089c9ef2115dda3b1e2">{"x":{"diagram":"digraph {\n\ngraph [layout = \"dot\",\n       outputorder = \"edgesfirst\",\n       bgcolor = \"white\",\n       rankdir = \"LR\"]\n\nnode [fontname = \"Helvetica\",\n      fontsize = \"10\",\n      shape = \"circle\",\n      fixedsize = \"true\",\n      width = \"0.5\",\n      style = \"filled\",\n      fillcolor = \"aliceblue\",\n      color = \"gray70\",\n      fontcolor = \"gray50\"]\n\nedge [fontname = \"Helvetica\",\n     fontsize = \"8\",\n     weight = \"1.5\",\n     color = \"gray80\",\n     arrowsize = \"0.5\"]\n\n  \"1\" [label = \"End\", shape = \"circle\", style = \"rounded,filled\", fontcolor = \"brown4\", color = \"brown4\", tooltip = \"ARTIFICIAL_END\n0 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFFFFF\"] \n  \"2\" [label = \"Start\", shape = \"circle\", style = \"rounded,filled\", fontcolor = \"chartreuse4\", color = \"chartreuse4\", tooltip = \"ARTIFICIAL_START\n0 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFFFFF\"] \n  \"3\" [label = \"Blood test\n332.06 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"Blood test\n332.06 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FCBBA1\"] \n  \"4\" [label = \"MRI SCAN\n248.99 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"MRI SCAN\n248.99 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FEE0D2\"] \n  \"5\" [label = \"Registration\n165.55 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"Registration\n165.55 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FFF5F0\"] \n  \"6\" [label = \"Triage and Assessment\n786.79 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"white\", color = \"grey\", tooltip = \"Triage and Assessment\n786.79 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#99000D\"] \n  \"7\" [label = \"X-Ray\n290.76 mins\", shape = \"rectangle\", style = \"rounded,filled\", fontcolor = \"black\", color = \"grey\", tooltip = \"X-Ray\n290.76 mins\", penwidth = \"1.5\", fixedsize = \"FALSE\", fontname = \"Arial\", fontsize = \"10\", fillcolor = \"#FCBBA1\"] \n\"2\"->\"5\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"3\"->\"4\" [label = \"1524.19 mins\", penwidth = \"2.92128602061254\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"4\"->\"1\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"5\"->\"6\" [label = \"756.21 mins\", penwidth = \"1.95322283903858\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"6\"->\"3\" [label = \"3040.61 mins\", penwidth = \"4.8327727871476\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"6\"->\"7\" [label = \"3173.28 mins\", penwidth = \"5\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n\"7\"->\"1\" [label = \" \", penwidth = \"1\", color = \"red4\", fontname = \"Arial\", fontsize = \"10\", weight = \"1\", constraint = \"TRUE\"] \n}","config":{"engine":"dot","options":null}},"evals":[],"jsHooks":[]}</script>
 </div>
 <div id="trim-to-time-window" class="section level2">
 <h2>Trim to Time Window</h2>