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Issues list

Sprint 20/21
#600 opened Nov 11, 2024 by cristinaetrv
18 tasks
Sprint 21
Sprint 19
#597 opened Oct 22, 2024 by cristinaetrv
11 of 25 tasks
Sprint 19
Cleanup documentation
#573 opened Sep 18, 2024 by akotlar
Sprint 15 Task List .task list A checklist of smaller tasks
#549 opened Jul 16, 2024 by cristinaetrv
27 of 46 tasks
Sprint 15
Rare Variant Analysis Paper Compendium rare variant analysis
#488 opened May 7, 2024 by akotlar
POE Deal with systematic bias in singular values under null model
#460 opened Apr 3, 2024 by cristinaetrv
PyPI Bystro package
#446 opened Mar 21, 2024 by cristinaetrv
[annotation] Add LOFTEE and REVEL annotation
#444 opened Mar 20, 2024 by akotlar
@akotlar
[rare variant] Add support for STAAR rare variant analysis
#443 opened Mar 20, 2024 by akotlar
@akotlar
[prs] Benchmark Langevin Dynamics PRS-CS against PRS-CS and SBayes-RC prs Polygenic Risk Score methods
#424 opened Mar 8, 2024 by akotlar
@austinTalbot7241993
[annotation] Stitch Together VCF Files - Second Step
#423 opened Mar 8, 2024 by akotlar
[ancestry] Use assembly when choosing which model to use ancestry
#422 opened Mar 8, 2024 by akotlar Sprint 9
@akotlar
Send assembly version with ancestry job requests ancestry
#419 opened Mar 7, 2024 by akotlar Sprint 8
@akotlar
Determine standard in/outbound ports that we need on servers
#412 opened Feb 20, 2024 by cristinaetrv
@akotlar @dlin30
Create local Ancestry cli tool ancestry
#404 opened Feb 14, 2024 by akotlar Sprint 7
@akotlar
Consistent bystro config naming scheme
#393 opened Feb 3, 2024 by wingolab
@akotlar @wingolab
4
Add p-value thresholding with GWAS catalog inputs prs Polygenic Risk Score methods
#371 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Add functionality for GWAS catalog as input prs Polygenic Risk Score methods
#370 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Add specific ancestry connection to genetic maps prs Polygenic Risk Score methods
#369 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Finish v1 of LD clumping procedure using genetic maps prs Polygenic Risk Score methods
#368 opened Jan 12, 2024 by cristinaetrv
@cristinaetrv
Investigate opensearch regression, not treating spaces as && within fields search
#349 opened Nov 13, 2023 by akotlar Sprint 4
@akotlar
2
[annotation] Decide on whether to output "intergenic" refSeq.siteType, or keep it as missing annotation
#330 opened Oct 26, 2023 by akotlar
@akotlar
[chore] Update annotation config to use snake case
#328 opened Oct 24, 2023 by akotlar
@akotlar
IBD Genomics Consortium - Task List for v2 .task list A checklist of smaller tasks
#326 opened Oct 24, 2023 by akotlar
6 tasks
@akotlar
1
[infrastructure] Update startup.yml to reflect new Bystro Perl structure infrastructure
#316 opened Oct 23, 2023 by akotlar Sprint 3
@akotlar
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