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Add DocumenterVitepress support and update documentation configuration #275

Add DocumenterVitepress support and update documentation configuration

Add DocumenterVitepress support and update documentation configuration #275

Triggered via push October 30, 2024 03:57
Status Success
Total duration 3m 32s
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CI.yml

on: push
Matrix: test
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11 warnings and 2 notices
Julia nightly - ubuntu-latest - x64 - push
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia nightly - macOS-latest - x64 - push
Codecov: Failed to properly create commit: The process '/Users/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia nightly - windows-latest - x64 - push
Codecov: Failed to properly create commit: The process 'D:\a\_actions\codecov\codecov-action\v4\dist\codecov.exe' failed with exit code 1
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L533
removing `stable` and linking `stable` to `v0.0.3`.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
Cannot resolve @ref for md"[`lordr`](@ref)" in src/api.md. - No docstring found in doc for binding `GeneFinder.lordr`. - No docstring found in doc for binding `GeneFinder.lordr`.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
invalid local link/image: file does not exist in src/index.md link = @ast MarkdownAST.Link("getstarted.md", "") do MarkdownAST.Text("Get Started") end
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
6 docstrings not included in the manual: GeneFinder._orfseq :: Union{Tuple{N}, Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}, Int64, Int64, GenomicFeatures.Strand}} where N GeneFinder._varsymbol :: Tuple{Any} GeneFinder.lordr :: Union{Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}}, Tuple{N}} where N GeneFinder._hasprematurestop :: Union{Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}}, Tuple{N}} where N GeneFinder.iscoding GeneFinder._varname :: Tuple{Any} These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/vitepress_config.jl#L111
DocumenterVitepress: No logo.png file found in `docs/src/assets`. Skipping logo replacement.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/vitepress_config.jl#L122
DocumenterVitepress: No favicon.ico file found in `docs/src/assets`. Skipping favicon replacement.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/writer.jl#L198
DocumenterVitepress: Did not find `docs/package.json` in your repository. Substituting default for now.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L533
removing `stable` and linking `stable` to `v0.0.3`.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`