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Ribosome Binding Sites motifs #289

Ribosome Binding Sites motifs

Ribosome Binding Sites motifs #289

Triggered via pull request December 9, 2024 00:44
@camilogarciaboterocamilogarciabotero
synchronize #37
rbs
Status Success
Total duration 3m 30s
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CI.yml

on: pull_request
Matrix: test
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8 warnings and 1 notice
Julia nightly - ubuntu-latest - x64 - pull_request
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Julia nightly - macOS-latest - x64 - pull_request
[setup-julia] x64 arch has been requested on a macOS runner that has an arm64 (Apple Silicon) architecture. You may have meant to use the "aarch64" arch instead (or left it unspecified for the correct default).
Documentation: ../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L46
Cannot resolve @ref for md"[`lordr`](@ref)" in src/api.md. - No docstring found in doc for binding `GeneFinder.lordr`. - No docstring found in doc for binding `GeneFinder.lordr`.
Documentation: ../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L46
11 docstrings not included in the manual: GeneFinder.orbs :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F} GeneFinder._hasprematurestop :: Union{Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}}, Tuple{N}} where N GeneFinder.RBS GeneFinder._rbswindows :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F} GeneFinder.lordr :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F<:GeneFinder.GeneFinderMethod} GeneFinder._varname :: Tuple{Any} GeneFinder._varsymbol :: Tuple{Any} GeneFinder._orfseq :: Union{Tuple{N}, Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}, Int64, Int64, GenomicFeatures.Strand}} where N GeneFinder.rbsdr :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F<:GeneFinder.GeneFinderMethod} GeneFinder.iscoding :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F<:GeneFinder.GeneFinderMethod} GeneFinder._findrbs :: Union{Tuple{OpenReadingFrameInterval{N, F}}, Tuple{F}, Tuple{N}} where {N, F} These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/vitepress_config.jl#L111
DocumenterVitepress: No logo.png file found in `docs/src/assets`. Skipping logo replacement.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/vitepress_config.jl#L122
DocumenterVitepress: No favicon.ico file found in `docs/src/assets`. Skipping favicon replacement.
Documentation: ../../../.julia/packages/DocumenterVitepress/8qgu7/src/writer.jl#L198
DocumenterVitepress: Did not find `docs/package.json` in your repository. Substituting default for now.
Documentation: ../../../.julia/packages/Documenter/Bs999/src/deploydocs.jl#L552
removing `stable` and linking `stable` to `v0.0.3`.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`