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Decoupling findorfs method #27

Merged
merged 18 commits into from
Mar 30, 2024
Merged

Decoupling findorfs method #27

merged 18 commits into from
Mar 30, 2024

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camilogarciabotero
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@camilogarciabotero camilogarciabotero commented Mar 29, 2024

This PR makes the findorfs method more flexible by separating the algorithm as a function call argument. In the future, new algorithms need to satisfy a simple IO interface and be added as an argument call to the findorfs method. Still to figure how to set that "interface" in the findorfs method.

  • Update tests to be more specific to ORF finding algorithms.
  • Update docs and README.
  • All other methods relying on findorfs need to be updated as well by having extra arg on the call.

@camilogarciabotero camilogarciabotero self-assigned this Mar 29, 2024
@camilogarciabotero camilogarciabotero added the enhancement New feature or request label Mar 30, 2024
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Seems good, according to CI

@camilogarciabotero camilogarciabotero merged commit 7704d98 into main Mar 30, 2024
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