feat(awsbatch): install aws CLI in a portable location with `minico…

…nda`
cape-ph · Oct 2, 2024 · 3cc7b84 · 3cc7b84
1 parent 82c4f5e
commit 3cc7b84
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Showing 3 changed files with 9 additions and 2 deletions.
diff --git a/nextflow.pkrvars.hcl b/nextflow.pkrvars.hcl
@@ -1,2 +1,2 @@
 ami_name_prefix      = "nextflow"
-additional_packages  = "java-21-amazon-corretto-devel bzip2"
+additional_packages  = "java-21-amazon-corretto-devel"
diff --git a/scripts/additional-scripts/awsbatch/01-install-awscli.sh b/scripts/additional-scripts/awsbatch/01-install-awscli.sh
@@ -0,0 +1,7 @@
+#!/usr/bin/env bash
+set -ex
+
+curl -L https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh
+bash miniconda.sh -b -f -p ~/miniconda
+~/miniconda/bin/conda install -c conda-forge -y awscli=2.17.63
+rm miniconda.sh
diff --git a/variables.pkr.hcl b/variables.pkr.hcl
@@ -8,7 +8,7 @@ packer {
 }
 
 locals {
-  packages = "amazon-efs-utils amazon-ssm-agent amazon-ec2-net-utils acpid tmux"
+  packages = "amazon-efs-utils amazon-ssm-agent amazon-ec2-net-utils acpid bzip2 tmux"
 }
 
 variable "additional_packages" {