CaImAn GUI and analysis toolbox is an interface for use with the CaImAn software toolbox: https://github.com/flatironinstitute/CaImAn
The caiman_gui is in development and will be available soon (keep checking this page for updates).
Installation 1.Install CaImAn as per instructions here: https://github.com/flatironinstitute/CaImAn.
2.Clone or download the GUI package from here: https://github.com/catubc/caiman_gui.
3.Install required python modules. Activate the caiman environment (as per instructions in CaImAn installation), and use conda to install the missing modules.
(caiman)...> conda install -c conda-forge opencv
(caiman)...> conda install -c conda-forge matplotlib
(caiman)...> conda install -c conda-forge tqdm
