v2

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v1.4267

Another attempt for memory usage reduction.

v1.4266

Umpire MS1 quantification and feature detection analysis (version: v1.4266)
command : java -jar -Xmx10G MS1Quant.jar ms1quant.params -mode[1 or 2] [Option]

-mode
1:Single file mode--> mzXML_file PepXML_file
Ex: -mode1 file1.mzXML file1.pep.xml
2:Folder mode--> mzXML_Folder PepXML_Folder, all generated csv tables will be merged into a single csv file
Ex: -mode2 /data/mzxml/ /data/pepxml/

Options
-C No of concurrent files to be processed (only for folder mode), Ex. -C5, default:1
-p Minimum probability, Ex. -p0.9, default:0.9
-ID Detect identified feature only
-O output folder, Ex. -O/data/

v1.4264

Reduce memory usage for -ID option - set a higher criteria for determining valid peak clusters
Add an option -O to specify output folder

v1.4263

PepXML parser in this version parses only the PSMs from the assigned mzXML file
Report MS1 intensity of parent precursor for each PSM