squash-gs

All relevant code and data for the manuscript "Genomic Prediction and Selection for Fruit Quality Traits in Winter Squash".

Table of contents

1. analysis - scripts used for cross-validation, parameter estimation, and calculating gain from selection
2. genotype_data - raw snp vcfs and filtering scripts
3. phenotype_data - raw phenotype data and scripts used for processing
4. selection_code - code showing model used for selection