delete FASTAs from chai1.py

chaidiscovery · Sep 10, 2024 · a7fa95d · a7fa95d
1 parent 3305f9a
commit a7fa95d
Showing 1 changed file with 0 additions and 22 deletions.
diff --git a/chai_lab/chai1.py b/chai_lab/chai1.py
@@ -169,28 +169,6 @@ def load_exported(comp_key: str, device: torch.device) -> torch.nn.Module:
 # Config
 
 
-# Load input fasta
-example_fasta1 = """>protein|7WJ3_A
-AGSHSMRYFSTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQWMFGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP
-"""
-
-example_fasta2 = """>protein|protein-one
-[ACE]GE[AIB][AIB][AIB][AIB]KE[AIB][AIB][AIB][AIB]KE[AIB][AIB][AIB][AIB]KE[AIB][AIB][AIB][AIB]K[AIB][AIB][AIB]WKG[NH2]
->protein|protein-two
-[KCJ][SEP][PPN][B3S][BAL][PPN]K[NH2]
->ligand|8HA0_J||prot-7VVJ_F|prot-8HAO_H
-CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
->protein|7WJ3_A||prot-7SR4_A|prot-short-GAAL
-AGSHSMRYFSTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGP
->ligand|some-smiles
-CC
->rna|some-rna
-AUGCGAUACGUA
->dna|some-dna
-ATGCGTACGTAC
-"""
-
-
 class DiffusionConfig:
     S_churn: float = 80
     S_tmin: float = 4e-4