fix setup.py

scripts/exregional_run_fcst.sh

@@ -117,7 +117,7 @@
 #
 . $USHdir/source_util_funcs.sh
 for sect in user nco platform workflow global cpl_aqm_parm constants fixed_files \
-  task_get_extrn_lbcs task_run_fcst task_run_post fire; do
+  task_get_extrn_lbcs task_run_fcst task_run_post smoke_dust_parm fire; do
   source_yaml ${GLOBAL_VAR_DEFNS_FP} ${sect}
 done
 
@@ -298,7 +298,7 @@ create_symlink_to_file $target $symlink ${relative_link_flag}
 # that the FV3 model is hardcoded to recognize, and those are the names 
 # we use below.
 #
-suites=( "FV3_RAP" "FV3_HRRR" "FV3_GFS_v15_thompson_mynn_lam3km" "FV3_GFS_v17_p8" )
+suites=( "FV3_RAP" "FV3_HRRR" "FV3_HRRR_gf" "FV3_GFS_v15_thompson_mynn_lam3km" "FV3_GFS_v17_p8" )
 if [[ ${suites[@]} =~ "${CCPP_PHYS_SUITE}" ]] ; then
   file_ids=( "ss" "ls" )
   for file_id in "${file_ids[@]}"; do
@@ -338,7 +338,7 @@ cd ${DATA}/INPUT
 #
 relative_link_flag="FALSE"
 
-if [ $(boolify "${CPL_AQM}") = "TRUE" ]; then
+if [ $(boolify "${CPL_AQM}") = "TRUE" ] || [ $(boolify "${DO_SMOKE_DUST}") = "TRUE" ]; then
   COMIN="${COMROOT}/${NET}/${model_ver}/${RUN}.${PDY}/${cyc}${SLASH_ENSMEM_SUBDIR}" #temporary path, should be removed later
 
   target="${COMIN}/${NET}.${cycle}${dot_ensmem}.gfs_data.tile${TILE_RGNL}.halo${NH0}.nc"
@@ -358,17 +358,35 @@ if [ $(boolify "${CPL_AQM}") = "TRUE" ]; then
     symlink="gfs_bndy.tile${TILE_RGNL}.${fhr}.nc"
     create_symlink_to_file $target $symlink ${relative_link_flag}
   done
-  target="${COMIN}/${NET}.${cycle}${dot_ensmem}.NEXUS_Expt.nc"
-  symlink="NEXUS_Expt.nc"
-  create_symlink_to_file $target $symlink ${relative_link_flag}
 
-  # create symlink to PT for point source in SRW-AQM
-  target="${COMIN}/${NET}.${cycle}${dot_ensmem}.PT.nc"
-  if [ -f ${target} ]; then
-    symlink="PT.nc"
+  if [ $(boolify "${CPL_AQM}") = "TRUE" ]; then
+    target="${COMIN}/${NET}.${cycle}${dot_ensmem}.NEXUS_Expt.nc"
+    symlink="NEXUS_Expt.nc"
     create_symlink_to_file $target $symlink ${relative_link_flag}
-  fi
 
+    # create symlink to PT for point source in SRW-AQM
+    target="${COMIN}/${NET}.${cycle}${dot_ensmem}.PT.nc"
+    if [ -f ${target} ]; then
+      symlink="PT.nc"
+      create_symlink_to_file $target $symlink ${relative_link_flag}
+    fi
+  else
+    ln -nsf ${FIXsmoke}/${PREDEF_GRID_NAME}/dust12m_data.nc .
+    ln -nsf ${FIXsmoke}/${PREDEF_GRID_NAME}/emi_data.nc .
+
+    smokefile="${COMIN}/${SMOKE_DUST_FILE_PREFIX}_${PDY}${cyc}00.nc"
+    if [ -f ${smokefile} ]; then
+      ln -nsf ${smokefile} ${SMOKE_DUST_FILE_PREFIX}.nc
+    else
+      if [ "${EBB_DCYCLE}" = "1" ]; then
+        ln -nsf ${FIXsmoke}/${PREDEF_GRID_NAME}/dummy_24hr_smoke_ebbdc1.nc ${SMOKE_DUST_FILE_PREFIX}.nc
+        echo "WARNING: Smoke file is not available, use dummy_24hr_smoke_ebbdc1.nc instead"
+      else
+        ln -nsf ${FIXsmoke}/${PREDEF_GRID_NAME}/dummy_24hr_smoke.nc ${SMOKE_DUST_FILE_PREFIX}.nc
+        echo "WARNING: Smoke file is not available, use dummy_24hr_smoke.nc instead"
+      fi
+    fi
+  fi
 else
   target="${INPUT_DATA}/${NET}.${cycle}${dot_ensmem}.gfs_data.tile${TILE_RGNL}.halo${NH0}.nc"
   symlink="gfs_data.nc"
@@ -520,7 +538,7 @@ if [ $(boolify ${WRITE_DOPOST}) = "TRUE" ]; then
     if [ $(boolify "${CPL_AQM}") = "TRUE" ]; then
       post_config_fp="${PARMdir}/upp/postxconfig-NT-AQM.txt"
     else
-      post_config_fp="${PARMdir}/upp/postxconfig-NT-fv3lam.txt"
+      post_config_fp="${PARMdir}/upp/postxconfig-NT-rrfs.txt"
     fi
     print_info_msg "
 ====================================================================

ush/config.smoke_dust.yaml

@@ -2,9 +2,12 @@ metadata:
   description: config for Smoke and Dust, RRFS_CONUS_3km
 user:
   RUN_ENVIR: community
-platform:
-  BUILD_MOD_FN: 'build_{{ user.MACHINE|lower() }}_intel_prod'
+  MACHINE: [hera/orion/hercules/gaea-c6]
+  ACCOUNT: [account name]
 workflow:
+  USE_CRON_TO_RELAUNCH: false
+  CRON_RELAUNCH_INTVL_MNTS: 3
+  EXPT_SUBDIR: smoke_dust_conus3km
   PREDEF_GRID_NAME: RRFS_CONUS_3km
   CCPP_PHYS_SUITE: FV3_HRRR_gf
   DATE_FIRST_CYCL: '2019072200'
@@ -19,10 +22,11 @@ workflow:
   FIELD_TABLE_TMPL_FN: field_table_smoke_dust.FV3_HRRR_gf
   DO_REAL_TIME: false
   COLDSTART: true
+#  WARMSTART_CYCLE_DIR: '/path/to/warm/start/files'
 nco:
-  envir_default: we2e_smoke_dust
-  NET_default: we2e_smoke_dust
-  RUN_default: we2e_smoke_dust
+  envir_default: test_smoke_dust
+  NET_default: smoke_dust
+  RUN_default: smoke_dust
 rocoto:
   tasks:
     taskgroups: '{{ ["parm/wflow/prep.yaml", "parm/wflow/smoke_dust.yaml", "parm/wflow/coldstart.yaml", "parm/wflow/post.yaml"]|include }}'
@@ -33,16 +37,23 @@ task_get_extrn_ics:
   EXTRN_MDL_NAME_ICS: RAP
   EXTRN_MDL_ICS_OFFSET_HRS: 0
   USE_USER_STAGED_EXTRN_FILES: true
+  EXTRN_MDL_SOURCE_BASEDIR_ICS: /scratch2/NAGAPE/epic/SRW-AQM_DATA/data_smoke_dust/RAP_DATA_SD/${yyyymmddhh} # hera
+#  EXTRN_MDL_SOURCE_BASEDIR_ICS: /work/noaa/epic/SRW-AQM_DATA/input_model_data/RAP/${yyyymmddhh} # orion/hercules
+#  EXTRN_MDL_SOURCE_BASEDIR_ICS: /gpfs/f6/bil-fire8/world-shared/UFS_SRW_data/develop/input_model_data/RAP/${yyyymmddhh} # gaea-c6
 task_get_extrn_lbcs:
   EXTRN_MDL_NAME_LBCS: RAP
   LBC_SPEC_INTVL_HRS: 6
   EXTRN_MDL_LBCS_OFFSET_HRS: 0
   USE_USER_STAGED_EXTRN_FILES: true
+  EXTRN_MDL_SOURCE_BASEDIR_LBCS: /scratch2/NAGAPE/epic/SRW-AQM_DATA/data_smoke_dust/RAP_DATA_SD/${yyyymmddhh} # hera
+#  EXTRN_MDL_SOURCE_BASEDIR_LBCS: /work/noaa/epic/SRW-AQM_DATA/input_model_data/RAP/${yyyymmddhh} # orion/hercules
+#  EXTRN_MDL_SOURCE_BASEDIR_LBCS: /gpfs/f6/bil-fire8/world-shared/UFS_SRW_data/develop/input_model_data/RAP/${yyyymmddhh}  # gaea-c6
 task_make_ics:
   VCOORD_FILE: "{{ workflow.FIXam }}/global_hyblev_fcst_rrfsL65.txt"
 task_make_lbcs:
   VCOORD_FILE: "{{ workflow.FIXam }}/global_hyblev_fcst_rrfsL65.txt"
 task_run_fcst:
+  OMP_NUM_THREADS_RUN_FCST: 1
   DT_ATMOS: 36
   LAYOUT_X: 15
   LAYOUT_Y: 20

ush/setup.py

@@ -1820,7 +1820,7 @@ def _dict_find(user_dict, substring):
 
     # Generate a flag file for cold start
     if expt_config["workflow"].get("COLDSTART"):
-        coldstart_date=date_to_str(workflow_config["DATE_FIRST_CYCL"])
+        coldstart_date = var_defns_cfg["workflow"]["DATE_FIRST_CYCL"]
         fn_pass=f"task_skip_coldstart_{coldstart_date}.txt"
         open(os.path.join(exptdir,fn_pass), 'a').close()