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Release 'devel' version with NEWS file ready for stable branch.
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charles-plessy committed Oct 17, 2023
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Package: CAGEr
Title: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Version: 2.7.1
Date: 2023-07-05
Version: 2.7.2
Date: 2023-10-07
Authors@R:
c( person("Vanja", "Haberle", email = "[email protected]", role = "aut"),
person("Charles", "Plessy", email = "[email protected]", role = "cre"),
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24 changes: 8 additions & 16 deletions NEWS.md
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# Changes in devel version

BUG FIXES

- Fix accidental deletion of the record of the _tag clustering_ method (#96).

NEW FEATURES

- New `resetCAGEexp()` function.
- New `flagByUpstreamSequences()` function.
- The `annotateCTSS` and `annotateConsensusClusters` function gain a
`upstream` and a `downstream` parameter to change the width of promoter
regions.

# Changes in version 2.7.1
# Changes in version 2.8.0

BUG FIXES

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`sample = NULL`. The bug was causing incorrectly short quantile ranges.
- Force the cluster names to stay sorted, to avoid a bug desynchronising
quantile information and genome coordinates.
- Fix accidental deletion of the record of the _tag clustering_ method (#96).

NEW FEATURES

- Allow URLs to files in `getCTSS()` (Fixes #50).
- Accelerated the computation of quantile position by ~20 times.
- New `resetCAGEexp()` function.
- New `flagByUpstreamSequences()` function.
- The `annotateCTSS` and `annotateConsensusClusters` function gain a
`upstream` and a `downstream` parameter to change the width of promoter
regions.

# Changes in version 2.6.0
# Changes in version 2.6.0 (26/4/2023)

BUG FIXES

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