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Try again without the ENCODE and zebrafish data packages.
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Charles Plessy committed May 13, 2024
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Showing 1 changed file with 7 additions and 6 deletions.
13 changes: 7 additions & 6 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -44,23 +44,24 @@ Depends:
methods,
MultiAssayExperiment,
R (>= 4.1.0)
Remotes:
url::http://promshift.genereg.net/CAGEr/PackageSource/ENCODEprojectCAGE_1.0.1.tar.gz,
url::http://promshift.genereg.net/CAGEr/PackageSource/ZebrafishDevelopmentalCAGE_0.99.0.tar.gz
#Remotes:
# url::http://promshift.genereg.net/CAGEr/PackageSource/ENCODEprojectCAGE_1.0.1.tar.gz,
# url::http://promshift.genereg.net/CAGEr/PackageSource/ZebrafishDevelopmentalCAGE_0.99.0.tar.gz
Suggests:
BSgenome.Dmelanogaster.UCSC.dm3,
BSgenome.Drerio.UCSC.danRer7,
BSgenome.Hsapiens.UCSC.hg18,
BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm9,
DESeq2,
ENCODEprojectCAGE,
# ENCODEprojectCAGE,
FANTOM3and4CAGE,
ggseqlogo,
BiocStyle,
knitr,
rmarkdown,
ZebrafishDevelopmentalCAGE
rmarkdown
# rmarkdown,
# ZebrafishDevelopmentalCAGE
Description: The _CAGEr_ package identifies transcription start sites (TSS) and
their usage frequency from CAGE (Cap Analysis Gene Expression) sequencing data.
It normalises raw CAGE tag count, clusters TSSs into tag clusters (TC) and
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