Suggest packages for FANTOM5 import.

charles-plessy · May 10, 2024 · aa10c93 · aa10c93
1 parent 4f3e494
commit aa10c93
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -44,13 +44,20 @@ Depends:
     MultiAssayExperiment,
     R (>= 4.1.0)
 Suggests:
+    BSgenome.Dmelanogaster.UCSC.dm3,
     BSgenome.Drerio.UCSC.danRer7,
+    BSgenome.Hsapiens.UCSC.hg18,
+    BSgenome.Hsapiens.UCSC.hg19,
+    BSgenome.Mmusculus.UCSC.mm9,
+    ENCODEprojectCAGE,
     DESeq2,
     FANTOM3and4CAGE,
     ggseqlogo,
     BiocStyle,
     knitr,
     rmarkdown
+    rmarkdown,
+    ZebrafishDevelopmentalCAGE
 Description: The _CAGEr_ package identifies transcription start sites (TSS) and
  their usage frequency from CAGE (Cap Analysis Gene Expression) sequencing data.
  It normalises raw CAGE tag count, clusters TSSs into tag clusters (TC) and