Merge remote-tracking branch 'upstream/main' into spherical_vol_rende…

…ring

.github/release.yml

@@ -0,0 +1,4 @@
+changelog:
+    exclude:
+        authors:
+            - pre-commit-ci

.github/workflows/build-and-release.yaml

@@ -0,0 +1,51 @@
+name: Create new release
+
+on:
+  push:
+    tags:
+      - 'v*' # Push events to matching v*, i.e. v1.0, v20.15.10
+
+jobs:
+  build_and_publish:
+    name: Build and Publish to PyPI
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.10'
+    - name: Install pypa/build
+      run: >-
+          python -m
+          pip install
+          build
+          --user
+    - name: Build source tarball
+      run: >-
+          python -m
+          build
+          --sdist
+          --outdir dist/
+          .
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.PYPI_API_TOKEN }}
+
+  create_gh_release:
+    name: Create Github release
+    needs: [build_and_publish]
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+      - uses: ncipollo/release-action@v1
+        # https://github.com/ncipollo/release-action
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          draft: true
+          tag: ${{ github.ref }}
+          prerelease: false
+          name: Release ${{ github.ref }}

.github/workflows/build-test.yaml

@@ -8,31 +8,28 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8, 3.9]
+        python-version: [3.9, '3.10', '3.11']
 
     steps:
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
-    - uses: actions/checkout@v3
-    - name: Install dependencies
+    - uses: actions/checkout@v4
+    - name: Install osmesa
       run: |
         sudo apt-get update && sudo apt-get upgrade
-        sudo apt install libgl1-mesa-dri libegl1-mesa libgbm1 libosmesa6 libosmesa6-dev
-        python -m pip install --upgrade pip
-        python -m pip install pytest
-        if [ -f tests/test_requirements.txt ]; then python -m pip install -r tests/test_requirements.txt; fi
-        python -m pip install --upgrade numpy PyOpenGL_accelerate
+        sudo apt-get install libosmesa6-dev
+    - name: Upgrade pip
+      run: python -m pip install --upgrade pip
     - name: Setup yt_idv
-      run: |
-        python -m pip install -e .
+      run: python -m pip install -e .[test]
     - name: Run Tests
       env:
           PYOPENGL_PLATFORM: osmesa
       run: pytest --html=report.html --self-contained-html
-    - uses: actions/upload-artifact@v3
+    - uses: actions/upload-artifact@v4
       name: Upload pytest report
       with:
-        name: pytest-report
+        name: pytest-report-py-${{ matrix.python-version }}
         path: report.html

.github/workflows/check-build.yaml

@@ -8,10 +8,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@master
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v1
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v5
       with:
-        python-version: 3.9
+        python-version: '3.10'
     - name: Install check-build dependencies
       run: |
         python -m pip install --upgrade pip

.github/workflows/check-min-numpy.yaml

@@ -0,0 +1,35 @@
+name: Run min numpy tests
+
+on: [pull_request]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.9]
+
+    steps:
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    - uses: actions/checkout@v4
+    - name: Install osmesa
+      run: |
+        sudo apt-get update && sudo apt-get upgrade
+        sudo apt-get install libosmesa6-dev
+    - name: Upgrade pip
+      run: python -m pip install --upgrade pip
+    - name: Setup yt_idv
+      run: python -m pip install -e .[test,minimal]
+    - name: Run Tests
+      env:
+          PYOPENGL_PLATFORM: osmesa
+      run: pytest --html=report.html --self-contained-html
+    - uses: actions/upload-artifact@v4
+      name: Upload pytest report
+      with:
+        name: pytest-report
+        path: report.html

.gitignore

@@ -117,3 +117,6 @@ ENV/
 
 # Screenshots
 snap_*.png
+
+# pytest outputs
+report.html

.pre-commit-config.yaml

@@ -1,14 +1,15 @@
 repos:
 -   repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v2.3.0
+    rev: v2.7.0
     hooks:
     - id: setup-cfg-fmt
       args: [
         --include-version-classifiers,
-        --max-py-version=3.10,
+        --max-py-version=3.11,
+        --min-py-version=3.9,
       ]
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v5.0.0
     hooks:
     - id: trailing-whitespace
     - id: end-of-file-fixer
@@ -17,25 +18,25 @@ repos:
     - id: check-executables-have-shebangs
     - id: check-yaml
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.4.0
+    rev: v3.19.0
     hooks:
     - id: pyupgrade
       args: [--py37-plus]
 -   repo: https://github.com/psf/black
-    rev: 23.3.0
+    rev: 24.10.0
     hooks:
     - id: black-jupyter
 
 -   repo: https://github.com/PyCQA/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
     - id: isort
       name: isort (python)
     - id: isort
       name: isort (cython)
       types: [cython]
 -   repo: https://github.com/PyCQA/flake8
-    rev: 6.0.0
+    rev: 7.1.1
     hooks:
     - id: flake8
       additional_dependencies: [
@@ -44,7 +45,7 @@ repos:
         flake8-2020==1.6.1,
       ]
 -   repo: https://github.com/asottile/blacken-docs
-    rev: 1.13.0
+    rev: 1.19.1
     hooks:
     -   id: blacken-docs
         additional_dependencies: [black==22.6.0]
@@ -53,7 +54,7 @@ repos:
     hooks:
     -   id: rst-backticks
 - repo: https://github.com/nbQA-dev/nbQA
-  rev: 1.7.0
+  rev: 1.9.1
   hooks:
     - id: nbqa-pyupgrade
       args: [--py37-plus]

.readthedocs.yml

@@ -9,15 +9,21 @@ version: 2
 sphinx:
   configuration: docs/conf.py
 
+# Specify the build os and python version
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.9"
+
 # Build documentation with MkDocs
 #mkdocs:
 #  configuration: mkdocs.yml
 
 # Optionally build your docs in additional formats such as PDF
 formats: []
 
-# Optionally set the version of Python and requirements required to build your docs
+
+# Optionally set the Python requirements required to build your docs
 python:
-  version: 3.7
   install:
-    - requirements: docs/requirements.txt
+  - requirements: docs/requirements.txt