HMF Tools

This repository contains various algorithms for analyzing genomic sequencing data

Resources used by the HMF algorithms can be downloaded from https://resources.hartwigmedicalfoundation.nl

More detailed descriptions of the following algorithms are available from the links below:

Acknowledgements

Hartwig Medical Foundation uses the YourKit Java Profiler for Performance Tuning.

YourKit supports open source projects with innovative and intelligent tools for monitoring and profiling Java and .NET applications. YourKit is the creator of YourKit Java Profiler, YourKit .NET Profiler, YourKit YouMonitor.

Name		Name	Last commit message	Last commit date
Latest commit History 17,835 Commits
amber		amber
ckb-importer		ckb-importer
cobalt		cobalt
compar		compar
cuppa		cuppa
extended-docs/linx		extended-docs/linx
fastq-stats		fastq-stats
gene-utils		gene-utils
gripss		gripss
health-checker		health-checker
hmf-common		hmf-common
hmf-id-generator		hmf-id-generator
iclusion-importer		iclusion-importer
isofox		isofox
lilac		lilac
linx		linx
neo		neo
orange		orange
paddle		paddle
patient-db		patient-db
patient-reporter		patient-reporter
pave		pave
protect		protect
purple		purple
sage		sage
serve		serve
sigs		sigs
stat-calcs		stat-calcs
sv-tools		sv-tools
teal		teal
vicc-importer		vicc-importer
virus-interpreter		virus-interpreter
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
hmf_code_scheme.xml		hmf_code_scheme.xml
pom.xml		pom.xml