use_github_action()

chuhousen · Sep 12, 2024 · 55489bc · 55489bc
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diff --git a/.github/.gitignore b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/R-CMD-check-old.yaml b/.github/workflows/R-CMD-check-old.yaml
@@ -0,0 +1,86 @@
+# # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+# on:
+#   push:
+#     branches:
+#       - main
+#       - master
+#   pull_request:
+#     branches:
+#       - main
+#       - master
+#
+# name: R-CMD-check
+#
+# jobs:
+#   R-CMD-check:
+#     runs-on: ${{ matrix.config.os }}
+#
+#     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+#
+#     strategy:
+#       fail-fast: false
+#       matrix:
+#         config:
+#           - {os: windows-latest, r: 'release'}
+#           - {os: macOS-latest, r: 'release'}
+#           - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+#           - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+#
+#     env:
+#       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+#       RSPM: ${{ matrix.config.rspm }}
+#       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+#
+#     steps:
+#       - uses: actions/checkout@v2
+#
+#       - uses: r-lib/actions/setup-r@v1
+#         with:
+#           r-version: ${{ matrix.config.r }}
+#
+#       - uses: r-lib/actions/setup-pandoc@v1
+#
+#       - name: Query dependencies
+#         run: |
+#           install.packages('remotes')
+#           saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+#           writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+#         shell: Rscript {0}
+#
+#       - name: Restore R package cache
+#         if: runner.os != 'Windows'
+#         uses: actions/cache@v2
+#         with:
+#           path: ${{ env.R_LIBS_USER }}
+#           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+#           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+#
+#       - name: Install system dependencies
+#         if: runner.os == 'Linux'
+#         run: |
+#           while read -r cmd
+#           do
+#             eval sudo $cmd
+#           done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+#
+#       - name: Install dependencies
+#         run: |
+#           remotes::install_deps(dependencies = TRUE)
+#           remotes::install_cran("rcmdcheck")
+#         shell: Rscript {0}
+#
+#       - name: Check
+#         env:
+#           _R_CHECK_CRAN_INCOMING_REMOTE_: false
+#         run: |
+#           options(crayon.enabled = TRUE)
+#           rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+#         shell: Rscript {0}
+#
+#       - name: Upload check results
+#         if: failure()
+#         uses: actions/upload-artifact@main
+#         with:
+#           name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+#           path: check
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -1,16 +1,14 @@
-# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
-# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
   pull_request:
-    branches:
-      - main
-      - master
+    branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -22,65 +20,33 @@ jobs:
       fail-fast: false
       matrix:
         config:
+          - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: macOS-latest, r: 'release'}
-          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v1
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Restore R package cache
-        if: runner.os != 'Windows'
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
-
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # amerifluxr <img src='man/figures/logo.png' align="right" height="138.5" />
 
-[![R-CMD-check](https://github.com/chuhousen/amerifluxr/workflows/R-CMD-check/badge.svg)](https://github.com/chuhousen/amerifluxr/actions)
+[![R-CMD-check](https://github.com/chuhousen/amerifluxr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/chuhousen/amerifluxr/actions/workflows/R-CMD-check.yaml)
 [![codecov](https://codecov.io/gh/chuhousen/amerifluxr/branch/master/graph/badge.svg)](https://codecov.io/gh/chuhousen/amerifluxr)
 [![CRAN\_Status\_Badge](https://www.r-pkg.org/badges/version/amerifluxr)](https://cran.r-project.org/package=amerifluxr)
 ![CRAN\_Downloads](https://cranlogs.r-pkg.org/badges/grand-total/amerifluxr)