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Update README.md
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cl3mente authored Jun 19, 2024
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Expand Up @@ -14,13 +14,16 @@ Run this in your terminal to pull a pre-made image from DockerHub:
`docker pull cl3mente/dualHGT:latest`

After the pull is complete, you will have a working image that you can use to run dualHGT on a container - specify your local input folder binding it to an _'input'_ volume in the container:

`docker run -v your-input-folder/:/app/input cl3mente/dualhgt:latest`

Alternatively, run this command from the folder itself:

`docker run -v $PWD/:/app/input cl3mente/dualhgt:latest`

This folder will be the channel for Docker to communicate with your local machine. This is where the results will be written, in the _'output'_ subfolder.
Once you run the container, run the dualHGT.py script with this command and the other options that you might want to customize:

`python dualHGT.py -i input/ [...]`

### Additional arguments
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