update project deployement

rm clic static from wheel
clean sdist
add pre-commit and flake8 lining

CMakeLists.txt

@@ -1,7 +1,5 @@
-# Set minimum version of CMake.
 cmake_minimum_required(VERSION 3.20)
 
-# Set project name and version
 project(
   ${SKBUILD_PROJECT_NAME}
   VERSION ${SKBUILD_PROJECT_VERSION}
@@ -10,40 +8,37 @@ project(
 string(TOLOWER ${PROJECT_NAME} PY_PACKAGE_NAME)
 set(CY_PACKAGE_NAME _${PY_PACKAGE_NAME})
 
-set(CLIC_REPO_TAG 0.7.1) # use master or branch name for dev
-set(CLIC_REPO_URL https://github.com/clEsperanto/CLIc_prototype.git)
-
-
-# Set flags for build
+## flags and options
 set(CMAKE_BUILD_TYPE Release)
 set(CMAKE_CXX_STANDARD 17)
 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D_LIBCPP_DISABLE_AVAILABILITY")
 if (CMAKE_CXX_COMPILER_ID STREQUAL "GNU") # library linking for UNIX
   set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
   set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fPIC")
 endif()
+set(CMAKE_SKIP_INSTALL_ALL_DEPENDENCY TRUE)
+option(BUILD_TESTING  OFF)
+option(BUILD_BENCHMARK  OFF)
+option(BUILD_SHARED_LIBS OFF)
+
+
+## CLIc dependency
+set(CLIC_REPO_TAG 0.7.1) # branch name for dev
+set(CLIC_REPO_URL https://github.com/clEsperanto/CLIc_prototype.git)
+add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/src/clic EXCLUDE_FROM_ALL)
 
 
-# look for python in virtual env or conda first before checking the system.
+## look for python
 set(Python_FIND_VIRTUALENV "FIRST")
 find_package(Python COMPONENTS Interpreter Development.Module REQUIRED)
 
-## fetch CLIc from repo release
-include(FetchContent)
-option(BUILD_TESTING  OFF)
-option(BUILD_BENCHMARK  OFF)
-option(BUILD_SHARED_LIBS OFF)
-FetchContent_Declare(
-  CLIc
-  GIT_REPOSITORY ${CLIC_REPO_URL}
-  GIT_TAG ${CLIC_REPO_TAG}
-)
-FetchContent_MakeAvailable(CLIc)
-
+## list of files to compile and folder to include
 set(PACKAGE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/${PY_PACKAGE_NAME})
-set(WRAPPER_DIR ${CMAKE_CURRENT_SOURCE_DIR}/wrapper)
+set(WRAPPER_DIR ${CMAKE_CURRENT_SOURCE_DIR}/src/wrapper)
 file(GLOB_RECURSE WRAPPER_SOURCES_FILES ${WRAPPER_DIR}/*.cpp)
 
+
+## build the python package
 if(SKBUILD)
   # Scikit-Build does not add your site-packages to the search path
   # automatically, so we need to add it _or_ the pybind11 specific directory
@@ -53,12 +48,10 @@ if(SKBUILD)
     OUTPUT_VARIABLE _tmp_dir
     OUTPUT_STRIP_TRAILING_WHITESPACE COMMAND_ECHO STDOUT)
   list(APPEND CMAKE_PREFIX_PATH "${_tmp_dir}")
-
   find_package(pybind11 CONFIG REQUIRED)
   python_add_library(${CY_PACKAGE_NAME} MODULE ${WRAPPER_SOURCES_FILES} WITH_SOABI)
 
   target_link_libraries(${CY_PACKAGE_NAME} PRIVATE CLIc::CLIc pybind11::headers)
-  add_dependencies(${CY_PACKAGE_NAME} CLIc)
   target_include_directories(${CY_PACKAGE_NAME} PUBLIC "$<BUILD_INTERFACE:${WRAPPER_DIR}>")
   target_compile_definitions(${CY_PACKAGE_NAME} PRIVATE VERSION_INFO=${PROJECT_VERSION})
 
@@ -73,7 +66,6 @@ if(SKBUILD)
   else()
       set(CY_PACKAGE_RPATH "$ORIGIN;$ORIGIN/${CMAKE_INSTALL_LIBDIR};$ORIGIN/${CMAKE_INSTALL_BINDIR}")
   endif()
-
   set_target_properties(${CY_PACKAGE_NAME} PROPERTIES
       INSTALL_RPATH "${CY_PACKAGE_RPATH}"
       BUILD_WITH_INSTALL_RPATH TRUE