gt bioss notebooks #118
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| name: NORDic post-pushing testing | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} using Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-version: latest | |
| use-mamba: true | |
| mamba-version: "*" | |
| channels: colomoto | |
| - name: Set up Graphviz | |
| uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies and build NORDic | |
| run: | | |
| conda activate test | |
| conda install -c colomoto -y -q maboss | |
| MaBoSS -h && echo "MaBoSS has been successfully installed." | |
| python -m pip install --upgrade pip | |
| pip install -r pip/requirements.txt | |
| pip install --use-pep517 -e . | |
| python -c "import NORDic; print('NORDic has been successfully installed and importable in Python.')" | |
| - name: Test NI (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_NI | |
| - name: Test PMR (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_PMR | |
| - name: Test DS (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_DS | |
| - name: Test DR (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_DR | |
| - name: Test PKN (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_PKN | |
| - name: Test SIM (CCHS) | |
| run: | | |
| cd tests/ && python -m tests_sim |