Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Release covidcast-indicators 0.2.22 #1481

Merged
merged 43 commits into from
Jan 20, 2022
Merged

Release covidcast-indicators 0.2.22 #1481

merged 43 commits into from
Jan 20, 2022

Commits on Nov 11, 2021

  1. Initial add of community profile indicator

    @krivard
    krivard committed Nov 11, 2021
    Configuration menu
    Copy the full SHA
    431d8c1 View commit details
    Browse the repository at this point in the history

Commits on Nov 12, 2021

  1. Changes to support all known backissues

    @krivard
    krivard committed Nov 12, 2021
    Configuration menu
    Copy the full SHA
    ff3b7da View commit details
    Browse the repository at this point in the history

  2. Documentation

    @krivard
    krivard committed Nov 12, 2021
    Configuration menu
    Copy the full SHA
    af692a6 View commit details
    Browse the repository at this point in the history

Commits on Nov 19, 2021

  1. [dsew] Add suggested dynamic validator params 

    Co-authored-by: nmdefries <[email protected]>
    @krivard @nmdefries
    krivard and nmdefries authored Nov 19, 2021
    Configuration menu
    Copy the full SHA
    07559f3 View commit details
    Browse the repository at this point in the history

Commits on Jan 10, 2022

  1. Fixes from code review 

    * Use export_start_date / export_end_date
* Correct nation aggregation for positivity as rate
    @krivard
    krivard committed Jan 10, 2022
    Configuration menu
    Copy the full SHA
    ac57ecc View commit details
    Browse the repository at this point in the history

  2. Actually fix rate aggregation this time

    @krivard
    krivard committed Jan 10, 2022
    Configuration menu
    Copy the full SHA
    e363c06 View commit details
    Browse the repository at this point in the history

  3. remove whitespace

    @krivard
    krivard committed Jan 10, 2022
    Configuration menu
    Copy the full SHA
    691e3e3 View commit details
    Browse the repository at this point in the history

Commits on Jan 12, 2022

  1. Merge pull request #1463 from cmu-delphi/bot/sync-prod-main 

    chore: sync prod->main
    @krivard
    krivard authored Jan 12, 2022
    Configuration menu
    Copy the full SHA
    4ac71f7 View commit details
    Browse the repository at this point in the history

Commits on Jan 13, 2022

  1. initial add hospital admissions 

    harder changes

spot fixes

almost working
    @nmdefries
    nmdefries committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    ecd4e4c View commit details
    Browse the repository at this point in the history

  2. simplify date keys logic

    @nmdefries
    nmdefries committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    f93c2ed View commit details
    Browse the repository at this point in the history

  3. fix state to nation calc

    @nmdefries
    nmdefries committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    2ad52eb View commit details
    Browse the repository at this point in the history

  4. linting and tests

    @nmdefries
    nmdefries committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    cfbb8a9 View commit details
    Browse the repository at this point in the history

  5. automate tests

    @nmdefries
    nmdefries committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    691727e View commit details
    Browse the repository at this point in the history

Commits on Jan 14, 2022

  1. keep most recent publish date

    @nmdefries
    nmdefries committed Jan 14, 2022
    Configuration menu
    Copy the full SHA
    3564a39 View commit details
    Browse the repository at this point in the history

  2. fix rate weight calculation when multiple days present

    @nmdefries
    nmdefries committed Jan 14, 2022
    Configuration menu
    Copy the full SHA
    9e2ab62 View commit details
    Browse the repository at this point in the history

  3. add production params

    @nmdefries
    nmdefries committed Jan 14, 2022
    Configuration menu
    Copy the full SHA
    1546af6 View commit details
    Browse the repository at this point in the history

  4. make weight normalization more robust to number states per day

    @nmdefries
    nmdefries committed Jan 14, 2022
    Configuration menu
    Copy the full SHA
    671ae9c View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2022

  1. prevent errors from missing hosp admissions before early jan 2021

    @nmdefries
    nmdefries committed Jan 18, 2022
    Configuration menu
    Copy the full SHA
    0090c01 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #1466 from cmu-delphi/ndefries/community_profile_hosp 

    Add hospital admissions to CPR indicator
    @krivard
    krivard authored Jan 18, 2022
    Configuration menu
    Copy the full SHA
    f07792a View commit details
    Browse the repository at this point in the history

  3. Merge branch 'main' into krivard/community_profile

    @nmdefries
    nmdefries authored Jan 18, 2022
    Configuration menu
    Copy the full SHA
    d7cc1be View commit details
    Browse the repository at this point in the history

  4. [cpr] fix bugs in export date handling

    @krivard
    krivard committed Jan 18, 2022
    Configuration menu
    Copy the full SHA
    481d875 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'krivard/community_profile' of github.com:cmu-delphi/cov… 

    …idcast-indicators into krivard/community_profile
    @krivard
    krivard committed Jan 18, 2022
    Configuration menu
    Copy the full SHA
    7c41663 View commit details
    Browse the repository at this point in the history

  6. Update Makefile for new ci

    @krivard
    krivard committed Jan 18, 2022
    Configuration menu
    Copy the full SHA
    a58388c View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2022

  1. Mock covidcast/meta 

    Added mock for requests.get function.
Made sure that signals that are inactive have the 'active' tag as False, which in turn affects whether it is a valid geo_signal combo.
    @qx-teo
    qx-teo committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    6b83048 View commit details
    Browse the repository at this point in the history

  2. Remove hard-coding from get_geo_signal_combos 

    Uses covidcast/meta to find source-signal pairings. Issue: how to resolve the db_source quidel mapping to multiple sources quidel_covid_ag and quidel_flu?
    @qx-teo
    qx-teo committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    aa16b00 View commit details
    Browse the repository at this point in the history

  3. Fix lint

    @qx-teo
    qx-teo committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    22d0491 View commit details
    Browse the repository at this point in the history

  4. Swopping keys and values for source_signal_mappings dict 

    Previously, keys weren't unique but values are. Swopped this to fix the issue.
    @qx-teo
    qx-teo committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    dcd0acc View commit details
    Browse the repository at this point in the history

  5. Update package description 

    Co-authored-by: nmdefries <[email protected]>
    @krivard @nmdefries
    krivard and nmdefries authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    2be28c5 View commit details
    Browse the repository at this point in the history

  6. Merge pull request #1363 from cmu-delphi/krivard/community_profile 

    New indicator: test positivity and volume from DSEW Community Profile Report
    @krivard
    krivard authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    03c6f45 View commit details
    Browse the repository at this point in the history

  7. Productionize! 

    - Update prod params file with ingestion and log directories.
- Add the indicator directory to the Jenkins build list.
    @korlaxxalrok
    korlaxxalrok committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    89c9cf7 View commit details
    Browse the repository at this point in the history

  8. Merge pull request #1472 from cmu-delphi/productionize-dsew-cpr 

    Productionize!
    @korlaxxalrok
    korlaxxalrok authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    e5aeefd View commit details
    Browse the repository at this point in the history

  9. Rename params file so it gets picked up by Jenkins

    @korlaxxalrok
    korlaxxalrok committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    875a0e1 View commit details
    Browse the repository at this point in the history

  10. Merge pull request #1474 from cmu-delphi/fix-productionize-dsew-cpr 

    Rename params file so it gets picked up by Jenkins
    @korlaxxalrok
    korlaxxalrok authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    f20a6e0 View commit details
    Browse the repository at this point in the history

  11. update pipeline to support Wave 13

    @nmdefries
    nmdefries committed Jan 19, 2022
    Configuration menu
    Copy the full SHA
    7bbbb3c View commit details
    Browse the repository at this point in the history

  12. Merge pull request #1470 from cmu-delphi/fix_covidcast_mock 

    Mock covidcast/meta requests.get call
    @krivard
    krivard authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    6141756 View commit details
    Browse the repository at this point in the history

  13. Merge pull request #1471 from cmu-delphi/fix_geosigcombo_hardcoding 

    Remove hard-coding from get_geo_signal_combos
    @krivard
    krivard authored Jan 19, 2022
    Configuration menu
    Copy the full SHA
    88476b1 View commit details
    Browse the repository at this point in the history

Commits on Jan 20, 2022

  1. Fix requests.get mock 

    #1470 mocked out requests.get call, but #1471 uses another requests.get call that did not get mocked properly. We check which call this is and provide the apporpriate mocked response.
    @qx-teo
    qx-teo committed Jan 20, 2022
    Configuration menu
    Copy the full SHA
    e8dac87 View commit details
    Browse the repository at this point in the history

  2. deduplicate microdata output fields

    @nmdefries
    nmdefries committed Jan 20, 2022
    Configuration menu
    Copy the full SHA
    027769b View commit details
    Browse the repository at this point in the history

  3. V17 actually reported as two fields

    @nmdefries
    nmdefries committed Jan 20, 2022
    Configuration menu
    Copy the full SHA
    6f89e0d View commit details
    Browse the repository at this point in the history

  4. Merge pull request #1477 from cmu-delphi/fix_datafetcher_mock 

    Fix requests.get mock
    @krivard
    krivard authored Jan 20, 2022
    Configuration menu
    Copy the full SHA
    6ef4968 View commit details
    Browse the repository at this point in the history

  5. Merge pull request #1475 from cmu-delphi/survey-wave-13 

    Update pipeline to support Wave 13
    @krivard
    krivard authored Jan 20, 2022
    Configuration menu
    Copy the full SHA
    521bf20 View commit details
    Browse the repository at this point in the history

  6. chore: bump delphi_utils to 0.2.10

    Delphi Deploy Bot committed Jan 20, 2022
    Configuration menu
    Copy the full SHA
    7fc264b View commit details
    Browse the repository at this point in the history

  7. chore: bump covidcast-indicators to 0.2.22

    Delphi Deploy Bot committed Jan 20, 2022
    Configuration menu
    Copy the full SHA
    3af5cdc View commit details
    Browse the repository at this point in the history