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Release covidcast-indicators 0.3.56 [ABANDONED] #2047

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Release covidcast-indicators 0.3.56 [ABANDONED] #2047

wants to merge 93 commits into from

Commits on Jul 1, 2024

  1. doc: add logger examples to README and format

    @dshemetov
    dshemetov committed Jul 1, 2024
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Commits on Jul 3, 2024

  1. deployment + staging details

    @minhkhul
    minhkhul committed Jul 3, 2024
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Commits on Jul 8, 2024

  1. wrap lines

    @nmdefries
    nmdefries committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. Update _template_python/INDICATOR_DEV_GUIDE.md 

    Co-authored-by: David Weber <[email protected]>
    @minhkhul @dsweber2
    minhkhul and dsweber2 authored Jul 9, 2024
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  2. Update _template_python/INDICATOR_DEV_GUIDE.md 

    Co-authored-by: David Weber <[email protected]>
    @minhkhul @dsweber2
    minhkhul and dsweber2 authored Jul 9, 2024
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  3. Update _template_python/INDICATOR_DEV_GUIDE.md 

    Co-authored-by: David Weber <[email protected]>
    @minhkhul @dsweber2
    minhkhul and dsweber2 authored Jul 9, 2024
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  4. Update INDICATOR_DEV_GUIDE.md with mysql syntax

    @minhkhul
    minhkhul authored Jul 9, 2024
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  5. Update INDICATOR_DEV_GUIDE.md reorder instruction on cron jobs

    @minhkhul
    minhkhul authored Jul 9, 2024
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Commits on Jul 10, 2024

  1. Merge branch 'main' into deployment-details

    @nmdefries
    nmdefries authored Jul 10, 2024
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  2. Merge pull request #1986 from cmu-delphi/deployment-details 

    Docs on new signal deployment details
    @nmdefries
    nmdefries authored Jul 10, 2024
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  3. Merge pull request #1992 from cmu-delphi/bot/sync-prod-main 

    chore: sync prod->main
    @melange396
    melange396 authored Jul 10, 2024
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Commits on Jul 11, 2024

  1. switch from input_file to input_dir (#1995)

    @minhkhul
    minhkhul authored Jul 11, 2024
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Commits on Jul 15, 2024

  1. adjust nssp max_age

    @minhkhul
    minhkhul committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. Merge pull request #1997 from cmu-delphi/adjust-nssp-sir-complains 

    Adjust nssp max_age
    @melange396
    melange396 authored Jul 16, 2024
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Commits on Jul 22, 2024

  1. add pyproject.toml

    @aysim319
    aysim319 committed Jul 22, 2024
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  2. made changes based on suggestion

    @aysim319
    aysim319 committed Jul 22, 2024
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  3. update ci config

    @aysim319
    aysim319 committed Jul 22, 2024
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  4. separate new line 

    Co-authored-by: Dmitry Shemetov <[email protected]>
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    aysim319 and dshemetov committed Jul 22, 2024
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  5. fix: add explicit boto and moto dependencies to indicators

    @dshemetov @aysim319
    dshemetov authored and aysim319 committed Jul 22, 2024
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  6. trying to get package data to show

    @aysim319
    aysim319 committed Jul 22, 2024
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  7. installing dev package before testing in ci

    @aysim319
    aysim319 committed Jul 22, 2024
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  8. adding dependency

    @aysim319
    aysim319 committed Jul 22, 2024
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  9. move comment to right package

    @aysim319
    aysim319 committed Jul 22, 2024
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  10. Update _delphi_utils_python/pyproject.toml 

    Co-authored-by: Dmitry Shemetov <[email protected]>
    @aysim319 @dshemetov
    aysim319 and dshemetov authored Jul 22, 2024
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Commits on Jul 24, 2024

  1. Merge pull request #1984 from cmu-delphi/1973-clean-up-delphi_utils 

    Clean up delphi_utils
    @aysim319
    aysim319 authored Jul 24, 2024
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  2. Revert "Clean up delphi_utils "

    @aysim319
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  3. Merge pull request #2001 from cmu-delphi/revert-1984-1973-clean-up-de… 

    …lphi_utils

Revert "Clean up delphi_utils "
    @melange396
    melange396 authored Jul 24, 2024
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  4. refactoring date parsing to seperate file

    @aysim319
    aysim319 committed Jul 24, 2024
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  5. first implimentation

    @aysim319
    aysim319 committed Jul 24, 2024
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  6. small cleanup and adding missing data

    @aysim319
    aysim319 committed Jul 24, 2024
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  7. changed wording and some logic

    @aysim319
    aysim319 committed Jul 24, 2024
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  8. made test more explicit

    @aysim319
    aysim319 committed Jul 24, 2024
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  9. add missing file

    @aysim319
    aysim319 committed Jul 24, 2024
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  10. cleaning up tests

    @aysim319
    aysim319 committed Jul 24, 2024
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  11. consolidating tests into one

    @aysim319
    aysim319 committed Jul 24, 2024
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  12. fixed wording

    @aysim319
    aysim319 committed Jul 24, 2024
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  13. consolidating test/fixture

    @aysim319
    aysim319 committed Jul 24, 2024
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  14. clean up test

    @aysim319
    aysim319 committed Jul 24, 2024
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  15. Update google_symptoms/delphi_google_symptoms/patch.py 

    remove old code; not used anymore

Co-authored-by: nmdefries <[email protected]>
    @aysim319 @nmdefries
    aysim319 and nmdefries committed Jul 24, 2024
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  16. clean up lint

    @aysim319
    aysim319 committed Jul 24, 2024
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  17. remove teardown

    @aysim319
    aysim319 committed Jul 24, 2024
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  18. cleaning and renaming

    @aysim319
    aysim319 committed Jul 24, 2024
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  19. more explicit branching for regular run vs patching, renaming, cleaning

    @aysim319
    aysim319 committed Jul 24, 2024
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  20. cleanup and rewrite logic

    @aysim319
    aysim319 committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. avoid linking keywords in PR template

    @melange396
    melange396 authored Jul 25, 2024
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  2. Update _delphi_utils_python/README.md 

    Co-authored-by: george <[email protected]>
    @dshemetov @melange396
    dshemetov and melange396 authored Jul 25, 2024
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  3. Merge pull request #1982 from cmu-delphi/ds/logger2 

    doc: add logger examples to README and format
    @dshemetov
    dshemetov authored Jul 25, 2024
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Commits on Jul 26, 2024

  1. Merge pull request #2003 from cmu-delphi/pr_template_keyword_removal 

    avoid linking keywords in PR template
    @melange396
    melange396 authored Jul 26, 2024
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Commits on Jul 29, 2024

  1. Refactor Jenkins pipeline 

    - Remove usage of parallel in the build and package stages
- Retain usage of parallel in the deploy stages
- Separate build and package into separate scripts to support build-only stages
- Add a build-only stage for dev/feature branches
    @korlaxxalrok
    korlaxxalrok committed Jul 29, 2024
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  2. Add separate build and package scripts

    @korlaxxalrok
    korlaxxalrok committed Jul 29, 2024
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  3. Update script comments

    @korlaxxalrok
    korlaxxalrok committed Jul 29, 2024
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  4. Remove unused script

    @korlaxxalrok
    korlaxxalrok committed Jul 29, 2024
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  5. Merge pull request #2005 from cmu-delphi/refactor-jenkins-pipeline 

    Refactor Jenkins pipeline
    @korlaxxalrok
    korlaxxalrok authored Jul 29, 2024
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Commits on Jul 30, 2024

  1. changes based on suggestion

    @aysim319
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  2. standardizing output dir in test

    @aysim319
    aysim319 committed Jul 30, 2024
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  3. changing back to session scope

    @aysim319
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  4. more logging and update params

    @aysim319
    aysim319 committed Jul 30, 2024
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  5. adding back conditional for num_export_days

    @aysim319
    aysim319 committed Jul 30, 2024
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  6. test_run does not like fixtures

    @aysim319
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  7. make deep copies of params fixtures

    @nmdefries @aysim319
    nmdefries authored and aysim319 committed Jul 30, 2024
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  8. linting

    @nmdefries @aysim319
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  9. test patch check if num_export_days is set or not

    @nmdefries @aysim319
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  10. patch fn takes params as an arg, like run_module

    @nmdefries @aysim319
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  11. list values added using actual day as an example

    @nmdefries @aysim319
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  12. move pull date creation into pull_gs_data

    @nmdefries @aysim319
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  13. don't modify num_export_days; define start/end date in terms of it an… 

    …d lag
    @nmdefries @aysim319
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  14. refer to params by name; patch_flag -> custom_run flag

    @nmdefries @aysim319
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  15. use test data based on recent actual indicator run

    @nmdefries @aysim319
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  16. say where gold test data came from

    @nmdefries @aysim319
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  17. not all date_utils tests need metadata

    @nmdefries @aysim319
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  18. formatting

    @nmdefries @aysim319
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  19. fn docs

    @nmdefries @aysim319
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  20. lint and cleanup

    @aysim319
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  21. Merge pull request #1999 from cmu-delphi/1996-patch-google-symptoms 

    1996 patch google symptoms
    @aysim319
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Commits on Aug 1, 2024

  1. adding more tests

    @aysim319
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  2. removed extra lag and made test more robust

    @aysim319
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  3. export_start_date is optional since the first available date is baked in

    @aysim319
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Commits on Aug 2, 2024

  1. need to account for historical / current run for adding lag

    @aysim319
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Commits on Aug 9, 2024

  1. adding validation script

    @aysim319
    aysim319 committed Aug 9, 2024
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  2. fix typo

    @aysim319
    aysim319 committed Aug 9, 2024
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  3. fixing typo in test

    @aysim319
    aysim319 committed Aug 9, 2024
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  4. lint

    @aysim319
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  5. sample run for validation

    @aysim319
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Commits on Aug 12, 2024

  1. remove unused input 

    Co-authored-by: nmdefries <[email protected]>
    @aysim319 @nmdefries
    aysim319 and nmdefries authored Aug 12, 2024
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  2. remove unused import

    @aysim319
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  3. Merge pull request #2015 from cmu-delphi/fix_new_date_for_google_symp… 

    …toms

Fix new date for google symptoms
    @nmdefries
    nmdefries authored Aug 12, 2024
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Commits on Aug 15, 2024

  1. added progress chunk to limit logging (#2024) 

    * added progress chunk to limit logging

* lint

* comment based on suggestion
    @aysim319
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Commits on Aug 27, 2024

  1. add hhs geo level (#2036)

    @minhkhul
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Commits on Aug 28, 2024

  1. Add discussion of patching functionality to indicator manual (#2031) 

    * basic patching info

* custom_run

* add hhs to geo section

* de-emphasize R in contributing doc, and add links

* ref/issue date intro

* naming and force push standards

* secret and params links
    @nmdefries
    nmdefries authored Aug 28, 2024
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Commits on Sep 9, 2024

  1. Clean up delphi_utils (take 2) (#2014) 

    * add pyproject.toml

* made changes based on suggestion

* update ci config

* separate new line

Co-authored-by: Dmitry Shemetov <[email protected]>

* fix: add explicit boto and moto dependencies to indicators

* trying to get package data to show

* installing dev package before testing in ci

* adding dependency

* move comment to right package

* Update _delphi_utils_python/pyproject.toml

Co-authored-by: Dmitry Shemetov <[email protected]>

* more suggestion

* adding pyproject.toml to template

* Update changehc/Makefile

* Update claims_hosp/Makefile

* Update doctor_visits/Makefile

* Update google_symptoms/Makefile

* Update hhs_hosp/Makefile

* Update nchs_mortality/Makefile

* Update nssp/Makefile

* Update nwss_wastewater/Makefile

* Update quidel_covidtest/Makefile

* Update sir_complainsalot/Makefile

* fix: dependence bugs and cleanup
* pandas[excel]<2 doesn't work, go back to xlrd and comment
* add mock to changehc
* add requests
* remove setup.py from template

* build: fix Jenkins build script

---------

Co-authored-by: Amaris Sim <[email protected]>
Co-authored-by: aysim319 <[email protected]>
Co-authored-by: Dmitry Shemetov <[email protected]>
    @melange396 @aysim319 @dshemetov
    4 people authored Sep 9, 2024
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Commits on Sep 11, 2024

  1. chore: bump delphi_utils to 0.3.25

    Delphi Deploy Bot committed Sep 11, 2024
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  2. chore: bump covidcast-indicators to 0.3.56

    Delphi Deploy Bot committed Sep 11, 2024
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  3. [create-pull-request] automated change

    @minhkhul
    minhkhul authored Sep 11, 2024
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