Merge pull request #622 from cmu-delphi/logging-patch

fix logger bug for batch issue upload

src/acquisition/covidcast/csv_importer.py

@@ -92,7 +92,7 @@ def find_issue_specific_csv_files(scan_dir, glob=glob):
         issue_date_value = int(issuedir_match.group(2))
         issue_date = CsvImporter.is_sane_day(issue_date_value)
         if issue_date:
-          logger.info('processing csv files from issue date: "' + str(issue_date) + '", directory', path)
+          logger.info(event='processing csv files from issue', detail=issue_date, file=path)
           yield from CsvImporter.find_csv_files(path, issue=(issue_date, epi.Week.fromdate(issue_date)), glob=glob)
         else:
           logger.warning(event='invalid issue directory day', detail=issue_date_value, file=path)

tests/acquisition/covidcast/test_csv_importer.py

@@ -3,9 +3,11 @@
 # standard library
 import unittest
 from unittest.mock import MagicMock
+from unittest.mock import patch
 from datetime import date
 import math
 import numpy as np
+import os
 
 # third party
 import pandas
@@ -42,6 +44,36 @@ def test_is_sane_week(self):
     self.assertFalse(CsvImporter.is_sane_week(202054))
     self.assertFalse(CsvImporter.is_sane_week(20200418))
 
+  @patch("os.path.isdir")
+  def test_find_issue_specific_csv_files(self,os_isdir_mock):
+      """Recursively explore and find issue specific CSV files."""
+      # check valid path
+      path_prefix='prefix/to/the/data/issue_20200408'
+      os_isdir_mock.return_value=True
+      issue_path=path_prefix+'ght/20200408_state_rawsearch.csv'
+
+      mock_glob = MagicMock()
+      mock_glob.glob.side_effect = ([path_prefix], [issue_path])
+
+      #check if the day is a valid day.
+      issuedir_match= CsvImporter.PATTERN_ISSUE_DIR.match(path_prefix.lower())
+      issue_date_value = int(issuedir_match.group(2))
+      self.assertTrue(CsvImporter.is_sane_day(issue_date_value))
+
+      found = set(CsvImporter.find_issue_specific_csv_files(path_prefix, glob=mock_glob))
+      self.assertTrue(len(found)>0)
+
+      # check unvalid path:
+      path_prefix_invalid='invalid/prefix/to/the/data/issue_20200408'
+      os_isdir_mock.return_value=False
+      issue_path_invalid=path_prefix_invalid+'ght/20200408_state_rawsearch.csv'
+      mock_glob_invalid = MagicMock()
+      mock_glob_invalid.glob.side_effect = ([path_prefix_invalid], [issue_path_invalid])
+
+      found = set(CsvImporter.find_issue_specific_csv_files(path_prefix_invalid, glob=mock_glob_invalid))
+      self.assertFalse(len(found)>0)
+
+
   def test_find_csv_files(self):
     """Recursively explore and find CSV files."""
 
@@ -306,4 +338,4 @@ def test_load_csv_with_valid_header(self):
     self.assertEqual(rows[2].missing_stderr, Nans.NOT_MISSING)
     self.assertEqual(rows[2].missing_sample_size, Nans.REGION_EXCEPTION)
 
-    self.assertIsNone(rows[3])
+    self.assertIsNone(rows[3])