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Update from main #238

Merged
merged 19 commits into from
Aug 6, 2024
Merged

Update from main #238

merged 19 commits into from
Aug 6, 2024

Commits on Jul 22, 2024

  1. Merge pull request #227 from cns-iu/corridor-as-validation 

    Added table for AS3D/UBERON/Sex
    @andreasbueckle
    andreasbueckle authored Jul 22, 2024
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  2. Merge pull request #228 from cns-iu/corridor-as-validation 

    Cleaned column headers
    @andreasbueckle
    andreasbueckle authored Jul 22, 2024
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  3. Merge pull request #229 from cns-iu/corridor-as-validation 

    Update make_table_as3d_uberon_sex.ipynb
    @andreasbueckle
    andreasbueckle authored Jul 22, 2024
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Commits on Jul 23, 2024

  1. Initial script for bimodal networks using Yash's data.

    @mginda
    mginda committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Update script and resulting network data 

    Revised script name; revised script to generate network. saved results for visualization.
    @mginda
    mginda committed Jul 24, 2024
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  2. Update network visualizations

    @mginda
    mginda committed Jul 24, 2024
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  3. Merge pull request #230 from cns-iu/networks 

    Update with initial script implemented and resulting network visualization.
    @mginda
    mginda authored Jul 24, 2024
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Commits on Jul 25, 2024

  1. Analysis of HRApop dataset metadata added to heatmaps

    @mginda
    mginda committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. Update to heatmaps 

    * Adds analysis of HRApop data set metadata to guide organ selected for visualization in heatmaps.
* Update to PopV tool heatmap: adds spleen and prostate AS and cell types to heatmap.
* Update to add heatmaps: SC Proteomics analysis data; Spatial Analysis data.
* Update export file names.
* Adds archive for old heatmap plots.
    @mginda
    mginda committed Jul 26, 2024
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  2. Merge pull request #231 from cns-iu/heatmap 

    Heatmap
    @mginda
    mginda authored Jul 26, 2024
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  3. Fixes legend and organ-AS labels

    @mginda
    mginda committed Jul 26, 2024
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Commits on Jul 29, 2024

  1. Merge pull request #232 from cns-iu/corridor-as-validation 

    Corridor as validation
    @andreasbueckle
    andreasbueckle authored Jul 29, 2024
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Commits on Jul 31, 2024

  1. Update eui

    @bherr2
    bherr2 committed Jul 31, 2024
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  2. Updates to UMAP analysis scripts 

    Attempt to apply two set dimensionality reduction. Adds PCA analysis.

No improvement on clustering related to ORGAN.
    @mginda
    mginda committed Jul 31, 2024
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  3. Merge pull request #233 from cns-iu/umap 

    Updates to UMAP analysis scripts
    @mginda
    mginda authored Jul 31, 2024
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Commits on Aug 1, 2024

  1. Revises dataframe names for PCA, tests new dimensions.

    @mginda
    mginda committed Aug 1, 2024
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  2. Merge pull request #234 from cns-iu/umap 

    Revises dataframe names for PCA, tests new dimensions.
    @mginda
    mginda authored Aug 1, 2024
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Commits on Aug 6, 2024

  1. Merge pull request #235 from cns-iu/corridor-as-validation 

    Corridor as validation
    @andreasbueckle
    andreasbueckle authored Aug 6, 2024
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  2. Merge pull request #236 from cns-iu/corridor-as-validation 

    Update hra_pop_counts.ipynb
    @andreasbueckle
    andreasbueckle authored Aug 6, 2024
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