pre-processing README

colomemaria · Nov 13, 2023 · 991a68c · 991a68c
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 ### Brief Summary of Structure of Input Files
 **counts file:** normalized expression data frame containing gene symbols in the rows and cells in the columns.
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 **anno samples:** data frame of the sample annotation from all samples (rows are sample IDs, columns: must contain "sample_ID" and "case_or_control" columns).
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 **anno cells:** data frame of the cell annotation from all samples (rows are cell IDs, columns: must contain "cell_ID", "cell_type" and "sample_ID" columns).