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KelSolaar committed Aug 27, 2023
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1 change: 1 addition & 0 deletions .coveragerc
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@@ -1,5 +1,6 @@
[run]
source = colour_demosaicing
sigterm = True
[report]
exclude_lines =
pragma: no cover
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3 changes: 0 additions & 3 deletions .flake8

This file was deleted.

4 changes: 2 additions & 2 deletions .github/PULL_REQUEST_TEMPLATE.md
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Expand Up @@ -15,11 +15,11 @@ is available to guide the process: https://www.colour-science.org/contributing/.
**Code Style and Quality**

- [ ] Unit tests have been implemented and passed.
- [ ] Mypy static checking has been run and passed.
- [ ] Pyright static checking has been run and passed.
- [ ] Pre-commit hooks have been run and passed.

<!-- The unit tests can be invoked with `poetry run invoke tests` -->
<!-- Mypy can be started with `dmypy run -- --show-error-codes --warn-unused-ignores --warn-redundant-casts --install-types --non-interactive -p colour-demosaicing` -->
<!-- Pyright can be started with `pyright --skipunannotated` -->

**Documentation**

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6 changes: 4 additions & 2 deletions .github/workflows/continuous-integration-documentation.yml
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Expand Up @@ -16,7 +16,7 @@ jobs:
- name: Environment Variables
run: |
echo "CI_PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
echo "CI_PACKAGE=colour" >> $GITHUB_ENV
echo "CI_PACKAGE=colour_demosaicing" >> $GITHUB_ENV
echo "CI_SHA=${{ github.sha }}" >> $GITHUB_ENV
echo "MPLBACKEND=AGG" >> $GITHUB_ENV
echo "COLOUR_SCIENCE__DOCUMENTATION_BUILD=True" >> $GITHUB_ENV
Expand All @@ -30,14 +30,16 @@ jobs:
sudo apt-get update
sudo apt-get --yes install latexmk texlive-full
- name: Install Poetry
env:
POETRY_VERSION: 1.4.0
run: |
curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python3 -
echo "$HOME/.poetry/bin" >> $GITHUB_PATH
shell: bash
- name: Install Package Dependencies
run: |
poetry run python -m pip install --upgrade pip
poetry install --extras "read-the-docs"
poetry install
poetry run python -c "import imageio;imageio.plugins.freeimage.download()"
shell: bash
- name: Build Documentation
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Expand Up @@ -31,6 +31,8 @@ jobs:
with:
python-version: ${{ matrix.python-version }}
- name: Install Poetry
env:
POETRY_VERSION: 1.4.0
run: |
curl -sSL https://install.python-poetry.org | POETRY_HOME=$HOME/.poetry python3 -
echo "$HOME/.poetry/bin" >> $GITHUB_PATH
Expand All @@ -51,9 +53,10 @@ jobs:
shell: bash
- name: Test with Pytest
run: |
poetry run python -W ignore -m pytest --disable-warnings --doctest-modules --ignore=$CI_PACKAGE/examples --cov=$CI_PACKAGE $CI_PACKAGE
poetry run python -W ignore -m pytest --doctest-modules --ignore=$CI_PACKAGE/examples --cov=$CI_PACKAGE $CI_PACKAGE
shell: bash
- name: Upload Coverage to coveralls.io
if: matrix.os == 'macOS-latest' && matrix.python-version == '3.11'
run: |
if [ -z "$COVERALLS_REPO_TOKEN" ]; then echo \"COVERALLS_REPO_TOKEN\" secret is undefined!; else poetry run coveralls; fi
shell: bash
Original file line number Diff line number Diff line change
Expand Up @@ -26,4 +26,4 @@ jobs:
pip install -r requirements.txt
- name: Static Type Checking
run: |
mypy --install-types --non-interactive --show-error-codes --warn-unused-ignores --warn-redundant-casts $CI_PACKAGE
pyright --skipunannotated
4 changes: 1 addition & 3 deletions .gitignore
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Expand Up @@ -2,12 +2,10 @@
*.pyc
*.pyo
.DS_Store
.coverage
.dmypy.json
.coverage*
.fleet
.idea
.ipynb_checkpoints
.mypy_cache
.sandbox
.vs
.vscode
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24 changes: 6 additions & 18 deletions .pre-commit-config.yaml
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@@ -1,15 +1,14 @@
repos:
- repo: https://github.com/asottile/pyupgrade
rev: v3.2.2
hooks:
- id: pyupgrade
args: [--py39-plus]
- repo: https://github.com/ikamensh/flynt/
rev: '0.77'
rev: '1.0.1'
hooks:
- id: flynt
- repo: https://github.com/charliermarsh/ruff-pre-commit
rev: 'v0.0.285'
hooks:
- id: ruff
- repo: https://github.com/psf/black
rev: 22.10.0
rev: 23.7.0
hooks:
- id: black
language_version: python3.9
Expand All @@ -18,14 +17,3 @@ repos:
hooks:
- id: blackdoc
language_version: python3.9
- repo: https://github.com/PyCQA/flake8
rev: 6.0.0
hooks:
- id: flake8
- repo: https://github.com/pycqa/pydocstyle
rev: 6.1.1
hooks:
- id: pydocstyle
args:
- --convention=numpy
- --add-ignore=D104,D200,D202,D205,D301,D400
7 changes: 2 additions & 5 deletions .readthedocs.yaml
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Expand Up @@ -13,8 +13,5 @@ formats:
- pdf

python:
install:
- method: pip
path: .
extra_requirements:
- read-the-docs
install:
- requirements: docs/requirements.txt
2 changes: 1 addition & 1 deletion CONTRIBUTORS.rst
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Expand Up @@ -31,5 +31,5 @@ About

| **Colour - Demosaicing** by Colour Developers
| Copyright 2015 Colour Developers – `[email protected] <[email protected]>`__
| This software is released under terms of New BSD License: https://opensource.org/licenses/BSD-3-Clause
| This software is released under terms of BSD-3-Clause: https://opensource.org/licenses/BSD-3-Clause
| `https://github.com/colour-science/colour-demosaicing <https://github.com/colour-science/colour-demosaicing>`__
29 changes: 8 additions & 21 deletions LICENSE
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@@ -1,24 +1,11 @@
Copyright 2015 Colour Developers
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
* Neither the name of the Colour Developers nor the
names of its contributors may be used to endorse or promote products
derived from this software without specific prior written permission.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL COLOUR DEVELOPERS BE LIABLE FOR ANY
DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.

2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE
22 changes: 11 additions & 11 deletions README.rst
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Expand Up @@ -5,7 +5,7 @@ Colour - Demosaicing
|actions| |coveralls| |codacy| |version|

.. |actions| image:: https://img.shields.io/github/workflow/status/colour-science/colour-demosaicing/Continuous%20Integration%20-%20Quality%20&%20Unit%20Tests?label=actions&logo=github&style=flat-square
.. |actions| image:: https://img.shields.io/github/actions/workflow/status/colour-science/colour-demosaicing/.github/workflows/continuous-integration-quality-unit-tests.yml?branch=develop&style=flat-square
:target: https://github.com/colour-science/colour-demosaicing/actions
:alt: Develop Build Status
.. |coveralls| image:: http://img.shields.io/coveralls/colour-science/colour-demosaicing/develop.svg?style=flat-square
Expand All @@ -20,11 +20,11 @@ Colour - Demosaicing

.. end-badges
A `Python <https://www.python.org/>`__ package implementing various
A `Python <https://www.python.org>`__ package implementing various
CFA (Colour Filter Array) demosaicing algorithms and related utilities.

It is open source and freely available under the
`New BSD License <https://opensource.org/licenses/BSD-3-Clause>`__ terms.
`BSD-3-Clause <https://opensource.org/licenses/BSD-3-Clause>`__ terms.

.. image:: https://raw.githubusercontent.com/colour-science/colour-demosaicing/master/docs/_static/Demosaicing_001.png

Expand Down Expand Up @@ -67,11 +67,11 @@ Primary Dependencies

**Colour - Demosaicing** requires various dependencies in order to run:

- `python >= 3.8, < 4 <https://www.python.org/download/releases/>`__
- `colour-science >= 4 <https://pypi.org/project/colour-science/>`__
- `imageio >= 2, < 3 <https://imageio.github.io/>`__
- `numpy >= 1.19, < 2 <https://pypi.org/project/numpy/>`__
- `scipy >= 1.5, < 2 <https://pypi.org/project/scipy/>`__
- `python >= 3.9, < 4 <https://www.python.org/download/releases>`__
- `colour-science >= 4.3 <https://pypi.org/project/colour-science>`__
- `imageio >= 2, < 3 <https://imageio.github.io>`__
- `numpy >= 1.22, < 2 <https://pypi.org/project/numpy>`__
- `scipy >= 1.8, < 2 <https://pypi.org/project/scipy>`__

Pypi
~~~~
Expand All @@ -90,7 +90,7 @@ Contributing
^^^^^^^^^^^^

If you would like to contribute to `Colour - Demosaicing <https://github.com/colour-science/colour-demosaicing>`__,
please refer to the following `Contributing <https://www.colour-science.org/contributing/>`__
please refer to the following `Contributing <https://www.colour-science.org/contributing>`__
guide for `Colour <https://github.com/colour-science/colour>`__.

Bibliography
Expand All @@ -110,7 +110,7 @@ Code of Conduct
---------------

The *Code of Conduct*, adapted from the `Contributor Covenant 1.4 <https://www.contributor-covenant.org/version/1/4/code-of-conduct.html>`__,
is available on the `Code of Conduct <https://www.colour-science.org/code-of-conduct/>`__ page.
is available on the `Code of Conduct <https://www.colour-science.org/code-of-conduct>`__ page.

Contact & Social
----------------
Expand All @@ -128,5 +128,5 @@ About

| **Colour - Demosaicing** by Colour Developers
| Copyright 2015 Colour Developers – `[email protected] <[email protected]>`__
| This software is released under terms of New BSD License: https://opensource.org/licenses/BSD-3-Clause
| This software is released under terms of BSD-3-Clause: https://opensource.org/licenses/BSD-3-Clause
| `https://github.com/colour-science/colour-demosaicing <https://github.com/colour-science/colour-demosaicing>`__
6 changes: 3 additions & 3 deletions TODO.rst
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Expand Up @@ -6,12 +6,12 @@ TODO

- colour_demosaicing/__init__.py

- Line 81 : # TODO: Remove legacy printing support when deemed appropriate.
- Line 82 : # TODO: Remove legacy printing support when deemed appropriate.

About
-----

| **Colour - Demosaicing** by Colour Developers
| Copyright 2015 Colour Developers `[email protected] <[email protected]>`__
| This software is released under terms of New BSD License: https://opensource.org/licenses/BSD-3-Clause
| Copyright 2015 Colour Developers - `[email protected] <[email protected]>`__
| This software is released under terms of BSD-3-Clause: https://opensource.org/licenses/BSD-3-Clause
| `https://github.com/colour-science/colour-demosaicing <https://github.com/colour-science/colour-demosaicing>`__
19 changes: 9 additions & 10 deletions colour_demosaicing/__init__.py
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Expand Up @@ -11,9 +11,10 @@

from __future__ import annotations

import contextlib
import numpy as np
import os
import subprocess # nosec
import subprocess

import colour

Expand All @@ -28,7 +29,7 @@

__author__ = "Colour Developers"
__copyright__ = "Copyright 2015 Colour Developers"
__license__ = "New BSD License - https://opensource.org/licenses/BSD-3-Clause"
__license__ = "BSD-3-Clause - https://opensource.org/licenses/BSD-3-Clause"
__maintainer__ = "Colour Developers"
__email__ = "[email protected]"
__status__ = "Production"
Expand All @@ -54,32 +55,30 @@

__major_version__ = "0"
__minor_version__ = "2"
__change_version__ = "3"
__change_version__ = "4"
__version__ = ".".join(
(__major_version__, __minor_version__, __change_version__)
)

try:
_version: str = (
subprocess.check_output( # nosec
["git", "describe"],
subprocess.check_output(
["git", "describe"], # noqa: S603, S607
cwd=os.path.dirname(__file__),
stderr=subprocess.STDOUT,
)
.strip()
.decode("utf-8")
)
except Exception:
_version: str = __version__ # type: ignore[no-redef]
_version: str = __version__

colour.utilities.ANCILLARY_COLOUR_SCIENCE_PACKAGES[
colour.utilities.ANCILLARY_COLOUR_SCIENCE_PACKAGES[ # pyright: ignore
"colour-demosaicing"
] = _version

del _version

# TODO: Remove legacy printing support when deemed appropriate.
try:
with contextlib.suppress(TypeError):
np.set_printoptions(legacy="1.13")
except TypeError:
pass
2 changes: 1 addition & 1 deletion colour_demosaicing/bayer/__init__.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
from .masks import masks_CFA_Bayer
from .mosaicing import mosaicing_CFA_Bayer
from .demosaicing import * # noqa
from .demosaicing import * # noqa: F403
from . import demosaicing

__all__ = []
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8 changes: 4 additions & 4 deletions colour_demosaicing/bayer/demosaicing/bilinear.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,14 +15,14 @@

from scipy.ndimage.filters import convolve

from colour.hints import ArrayLike, Literal, NDArray, Union
from colour.hints import ArrayLike, Literal, NDArrayFloat
from colour.utilities import as_float_array, tstack

from colour_demosaicing.bayer import masks_CFA_Bayer

__author__ = "Colour Developers"
__copyright__ = "Copyright 2015 Colour Developers"
__license__ = "New BSD License - https://opensource.org/licenses/BSD-3-Clause"
__license__ = "BSD-3-Clause - https://opensource.org/licenses/BSD-3-Clause"
__maintainer__ = "Colour Developers"
__email__ = "[email protected]"
__status__ = "Production"
Expand All @@ -34,8 +34,8 @@

def demosaicing_CFA_Bayer_bilinear(
CFA: ArrayLike,
pattern: Union[Literal["RGGB", "BGGR", "GRBG", "GBRG"], str] = "RGGB",
) -> NDArray:
pattern: Literal["RGGB", "BGGR", "GRBG", "GBRG"] | str = "RGGB",
) -> NDArrayFloat:
"""
Return the demosaiced *RGB* colourspace array from given *Bayer* CFA using
bilinear interpolation.
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8 changes: 4 additions & 4 deletions colour_demosaicing/bayer/demosaicing/malvar2004.py
Original file line number Diff line number Diff line change
Expand Up @@ -18,14 +18,14 @@
import numpy as np
from scipy.ndimage.filters import convolve

from colour.hints import ArrayLike, Literal, NDArray, Union
from colour.hints import ArrayLike, Literal, NDArrayFloat
from colour.utilities import as_float_array, ones, tstack

from colour_demosaicing.bayer import masks_CFA_Bayer

__author__ = "Colour Developers"
__copyright__ = "Copyright 2015 Colour Developers"
__license__ = "New BSD License - https://opensource.org/licenses/BSD-3-Clause"
__license__ = "BSD-3-Clause - https://opensource.org/licenses/BSD-3-Clause"
__maintainer__ = "Colour Developers"
__email__ = "[email protected]"
__status__ = "Production"
Expand All @@ -37,8 +37,8 @@

def demosaicing_CFA_Bayer_Malvar2004(
CFA: ArrayLike,
pattern: Union[Literal["RGGB", "BGGR", "GRBG", "GBRG"], str] = "RGGB",
) -> NDArray:
pattern: Literal["RGGB", "BGGR", "GRBG", "GBRG"] | str = "RGGB",
) -> NDArrayFloat:
"""
Return the demosaiced *RGB* colourspace array from given *Bayer* CFA using
*Malvar (2004)* demosaicing algorithm.
Expand Down
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