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aguang authored Feb 5, 2019
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Expand Up @@ -22,13 +22,19 @@ Don't forget to set the C++14 compiler flags if you do this!

## Installation

We recommend installing the release version [through Bioconductor](https://bioconductor.org/packages/release/bioc/html/RSeqAn.html). Instructions are provided on their page.
We recommend installing the release version [through Bioconductor](https://bioconductor.org/packages/release/bioc/html/RSeqAn.html), especially if you are running R on Windows. Instructions are provided on their page.

If you have `devtools`, then the development version can be installed from here by running:
Version 1.3.1 can also be installed [through Bioconductor](http://bioconductor.org/packages/devel/bioc/html/RSeqAn.html), downloaded as [a tagged release](https://github.com/compbiocore/RSeqAn/releases/tag/v1.3.1), or installed with `devtools` by running:
```r
devtools::install_github("compbiocore/RSeqAn")
devtools::install_github("compbiocore/RSeqAn", ref="v1.3.1")
```
The development version contains `Rcpp::as` and `Rcpp::wrap` functions for `CharString`.
This version contains `Rcpp::as` and `Rcpp::wrap` functions for `CharString` and is the one submitted to the [Journal of Open Source Software](https://joss.theoj.org/).

The development version can be installed with `devtools` by running:
```r
devtools::install_github("compbiocore/RSeqAn", ref="devel")
```
This version contains additional wrappers, though we cannot guarantee that they will work for you.

## Author

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