Build with backwards-compatible Numpy v2, allow newer versions of Num…

…py, Pandas, and XGBoost at runtime

pyproject.toml

@@ -33,14 +33,14 @@ classifiers = [
 ]
 requires-python = ">=3.8"
 dependencies = [
-    "numpy>=1.16,<2",
-    "pandas>=1,<2",
+    "numpy>=1.25,<3",
+    "pandas>=1,<3",
     "pyarrow",
     "pyteomics>=3.5,<5",
     "tomlkit>=0.5,<1",
     "sqlalchemy>=1.3,<2",
     "click>=7,<9",
-    "xgboost>=1.3,<2",
+    "xgboost>=1.3",
     "lxml>=4",
     "rich>=13",
     "pydantic>=2",
@@ -75,7 +75,7 @@ publication = "https://doi.org/10.1093/nar/gkad335/"
 ms2pip = "ms2pip.__main__:main"
 
 [build-system]
-requires = ["setuptools", "cython", "oldest-supported-numpy"]
+requires = ["setuptools", "cython", "numpy>=2.0"]
 build-backend = "setuptools.build_meta"
 
 [tool.setuptools.packages.find]