Code

Simple GUI test for CI#223

Code

Merged

constantinpape merged 36 commits intocomputational-cell-analytics:devcomputational-cell-analytics/micro-sam:devfrom GenevieveBuckley:gui-tests-plus-codecovGenevieveBuckley/micro-sam:gui-tests-plus-codecovCopy head branch name to clipboardOct 17, 2023

+67-4

Commits

Commits on Sep 27, 2023

• Switch to pytest (previously used unittest)

  GenevieveBuckley

  committed
  984a7a4

• Testing CI, remove pytest-qt for now

  GenevieveBuckley

  authored
  ed1bb00

• Is micromamba faster for CI than miniconda

  GenevieveBuckley

  authored
  adc161a

• Update test.yaml (more minimal micromamba setup config)

  GenevieveBuckley

  authored
  1cbd132

• Update environment_cpu.yaml (put name at top for micromamba CI install)

  GenevieveBuckley

  authored
  59a8c4f

• Update environment_gpu.yaml (put name up top to avoid micromamba CI setup problems)

  GenevieveBuckley

  authored
  3cfc777

• Fix filename pointing to environment_cpu.yaml

  GenevieveBuckley

  authored
  55a7813

• Generate code coverage report for CI tests

  Show description for 246f642
  GenevieveBuckley

  authored
  246f642

• Update test.yaml (install pytest-cov for code coverage reports)

  GenevieveBuckley

  authored
  6045f6a

• Fix code coverage call in CI

  GenevieveBuckley

  authored
  fee3c6f

• Update pyproject.toml to include pytest-cov default arguments

  GenevieveBuckley

  authored
  f86fcf8

• Update test.yaml (pytest-cov default arguments now in pyproject.toml settings)

  GenevieveBuckley

  authored
  1fea5c9

• Update pyproject.toml (wrap pytest adopts args in quote string)

  GenevieveBuckley

  authored
  b0b57e5

• Update pyproject.toml (rename code coverage output file)

  GenevieveBuckley

  authored
  dbbc441

• Update test.yaml (try experimental codecov@v4 github action)

  GenevieveBuckley

  authored
  682f1e5

• Update test.yaml (explicitly specify location of coverage.xml file)

  GenevieveBuckley

  authored
  8b50d4f

• Update test.yaml (reduce duplicate CI runs)

  GenevieveBuckley

  authored
  0cf6803

• Update pyproject.toml (fix TOML formatting)

  GenevieveBuckley

  authored
  f943015

Commits on Oct 4, 2023

• Update test.yaml - more verbose output for debugging

  GenevieveBuckley

  authored
  cda309f

• Update pyproject.toml - fix pytest configuration

  GenevieveBuckley

  authored
  22d0064

• Update test.yaml - less verbose output in github actions

  GenevieveBuckley

  authored
  f5d34d4

• Hacky testing how to make GUI integration tests

  GenevieveBuckley

  committed
  9319bd4

Commits on Oct 16, 2023

• Github actions CI, napari and pyqt are required dependencies for GUI testing

  GenevieveBuckley

  committed
  5f2435e

• Remove separate gui test CI workflow file

  GenevieveBuckley

  committed
  11f002b

• Codecov CI, update workflow file secret token

  GenevieveBuckley

  committed
  65cee54

• Install napari and pyqt with pip for GUI tests in CI

  GenevieveBuckley

  committed
  9177464

• Comment out all gui tests

  GenevieveBuckley

  committed
  4dad937

• Increase github actions timeout limit to 60 minutes

  GenevieveBuckley

  committed
  ade3195

• Github actions CI, need headless gui action in pytest job

  GenevieveBuckley

  committed
  cd9e5f7

• Report slowest test durations

  GenevieveBuckley

  committed
  3152239

• Add GUI test

  GenevieveBuckley

  committed
  aaa12cc

• Make GUI 2d annotator test have 2d image input

  GenevieveBuckley

  committed
  2feb208

• Pytest marker for GUI tests

  GenevieveBuckley

  committed
  06cacf4

• Trigger CI

  GenevieveBuckley

  committed
  c78c6f5

• from typing import Tuple, in visualization.py

  GenevieveBuckley

  committed
  8395dac

• Merge branch 'dev' into gui-tests-plus-codecov

  GenevieveBuckley

  authored
  5618fc4