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Pull requests: connor-lab/ncov2019-artic-nf

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Pull requests list

Update Syntax for Compatibility with Nextflow 23.04.4
#131 opened Oct 5, 2023 by eptroendle Loading…
Add nextflow dependency
#129 opened Oct 17, 2022 by pdp10 Loading…
Fix dsl2 syntax errors
#128 opened Oct 17, 2022 by rdeborja Loading…
1
Enable medaka to run V4 primer scheme
#126 opened Aug 8, 2022 by pdp10 Loading…
fix: update to artic 1.2.2
#118 opened Feb 23, 2022 by thomasbtf Loading…
Add github action to build a Docker image and update for Nextflow 21.04.1
#109 opened Jun 28, 2021 by antunderwood Loading…
Variant definitions
#101 opened Apr 9, 2021 by m-bull Loading…
Illumina
#100 opened Apr 8, 2021 by dianalir Loading…
Kubernetes process
#82 opened Nov 30, 2020 by ctr26 Loading…
Adding mean coverage to qc.py
#79 opened Oct 8, 2020 by FredDodd6 • Draft
1
adding -f Mark reads as QCFAIL instead of excluding them to trim.
#70 opened Sep 9, 2020 by FredDodd6 • Draft
5
Add ampliconstats process for all the files (Samtools development branch)
#58 opened Jun 29, 2020 by ac55-sanger Loading…
2
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