The scripts in this repository perform the following tasks necessary for the analysis from the manuscript "Prior upregulation of interferon pathways in the nasopharynx impacts viral shedding following live attenuated influenza vaccine challenge in children"
Authors: André G Costa-Martins, Karim Mane, Benjamin B Lindsey, Rodrigo L T Ogava, Ícaro Castro, Ya Jankey Jagne, Hadijatou J Sallah, Edwin P Armitage, Sheikh Jarju, Bankole Ahadzie, Rebecca Ellis-Watson, John S Tregoning, Colin D. Bingle, Debby Bogaert, Ed Clarke, Jose Ordovas-Montanes, David Jeffries, Beate Kampmann, Helder I Nakaya & Thushan I de Silva
Co-corresponding authors:
Thushan I. de Silva, The Florey Institute for Host-Pathogen Interactions and Department of Infection, Immunity and Cardiovascular Disease, The University of Sheffield, Sheffield, UK
Helder I. Nakaya, Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil
Bioinformatician:
Affiliation: