main after merge with kym linux, DO_KYMOGRAPH_ANALYSIS=F #101

	name: Test with flake8 and pytest (cudmore)

	on:
	pull_request:
	branches: [main]
	push:
	branches: [master]

	permissions:
	contents: read

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	platform: [ubuntu-latest, windows-latest, macos-latest]
	python-version: ["3.8", "3.9", "3.10", "3.11"]
	steps:
	- uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip
	cache-dependency-path: setup.py

	# these libraries enable testing on Qt on linux
	- name: Install Linux dependencies
	uses: tlambert03/setup-qt-libs@v1

	# workaround for testing Qt on linux
	- name: Workaround for testing Qt on linux
	if: runner.os == 'Linux'
	run: \|
	sudo mkdir /usr/bin/platforms
	sudo ln -s /our/local/libqxcb.so /usr/bin/platforms/libqxcb.so

	- name: Install dependencies
	run: \|
	pip install -e '.[gui]'
	pip install '.[test]'

	- name: Run flake8
	run: \|
	flake8 ./sanpy --count --select=E9,F63,F7,F82 --show-source --statistics

	- name: Test and generate coverage report
	run: \|
	# ignore /interface tests, they are running out of memory on github?
	#pytest --cov=./tests --cov-report=xml --ignore=./tests/interface ./tests
	pytest --cov=./tests --cov-report=xml ./tests

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3

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