refactored analysis util #131
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| name: Test with flake8 and pytest (cudmore) | |
| on: | |
| pull_request: | |
| branches: [main] | |
| push: | |
| branches: [master] | |
| # permissions: | |
| # contents: read | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| # platform: [ubuntu-latest, windows-latest, macos-latest] | |
| platform: [windows-latest, macos-latest] | |
| # python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| # env: | |
| # DISPLAY: ':99.0' | |
| steps: | |
| - name: get sanpyrepo | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # cache: pip | |
| # cache-dependency-path: setup.py | |
| # enable testing on Qt on linux | |
| # - name: Install Linux dependencies | |
| # uses: tlambert03/setup-qt-libs@v1 | |
| # workaround for testing Qt on linux | |
| # - name: Workaround for testing Qt on linux | |
| # if: runner.os == 'Linux' | |
| # run: | | |
| # sudo mkdir /usr/bin/platforms | |
| # sudo ln -s /our/local/libqxcb.so /usr/bin/platforms/libqxcb.so | |
| - name: Install dependencies | |
| run: | | |
| pip install '.[test]' | |
| - name: Run flake8 | |
| run: | | |
| flake8 ./sanpy --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Test and generate coverage report | |
| run: | | |
| # ignore /interface tests, they are running out of memory on github? | |
| # pytest --cov=./tests --cov-report=xml --ignore=./tests/interface ./tests | |
| pytest -s --cov=./tests --cov-report=xml ./tests | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 |